Dockerfile

FROM  ubuntu:xenial
LABEL maintainer achillesrasquinha@gmail.com

RUN apt-get update --fix-missing
RUN apt-get install -y --no-install-recommends \
                apt-transport-https \
                gcc \
                git \
                python3-dev \ 
                python3-pip \
                python3-tk \
                software-properties-common \ 
                graphviz-dev \
        && echo debconf shared/accepted-oracle-license-v1-1 select true | debconf-set-selections 
RUN add-apt-repository -y ppa:webupd8team/java 
RUN apt-get update 
RUN apt-get install -y --no-install-recommends oracle-java8-installer 
RUN apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E084DAB9 
RUN add-apt-repository 'deb [arch=amd64,i386] https://cran.rstudio.com/bin/linux/ubuntu xenial/' 
RUN apt-get update 
RUN apt-get install -y r-base 
RUN pip3 install --upgrade pip 
RUN pip3 install setuptools 
RUN pip3 install wheel 
RUN pip3 install numpy
RUN pip3 install pyyaml \
        && git clone https://github.com/HelikarLab/candis.git 
        # && pip3 install -r ./candis/requirements.txt 
        # && pip3 install ./candis 
        # && rm -rf /var/lib/apt/lists/* 
        # && rm -rf /var/cache/oracle-jdk8-installer

COPY . /app

WORKDIR /app

RUN pip3 install --no-binary javabridge -r requirements.txt
RUN pip3 install .

EXPOSE 5000

CMD ["candis"]