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Apr 10, 2017
c2db919 · Apr 10, 2017

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cmd line:

./ancestry_hmm -i example.panel -s example.sample -a 2 0.8 0.2 -p 0 100000 0.8 -p 1 10 0.2 -g -e 1e-3

This will fit a model of a single pulse at time 10 with 80% of individuals from the first population, and 20% from the second. 
Genotypes are used with a uniform error rate of 1e-3. 
All individuals are ploidy 2.