diff --git a/.gitmodules b/.gitmodules new file mode 100644 index 0000000..3add4d7 --- /dev/null +++ b/.gitmodules @@ -0,0 +1,3 @@ +[submodule "themes/dimension"] + path = themes/dimension + url = https://github.com/sethmacleod/dimension diff --git a/config.toml b/config.toml new file mode 100644 index 0000000..d3456b3 --- /dev/null +++ b/config.toml @@ -0,0 +1,53 @@ +baseurl = "http://example.org" +#title = "KCNI Summer School 2020

Solving Problems in Mental Health Using Multi-Scale Computational Neuroscience" +title = "KCNI Summer School 2020" +#

Solving Problems in Mental Health Using Multi-Scale Computational Neuroscience" + + +theme = "dimension" +languageCode = "en-us" +defaultContentLanguage = "en" +enableRobotsTXT = true +disableKinds=["RSS"] + +[params] + description = "Solving Problems in Mental Health Using Multi-Scale Computational Neuroscience

6-12 July 2020

Krembil Centre for Neuroinformatics
Centre for Addiction and Mental Health
Toronto

krembilneuroinformatics.ca

" + #description = "

6-12 July 2020

Krembil Centre for Neuroinformatics
Centre for Addiction and Mental Health
Toronto
" + #description = 'A fully responsive site template designed by HTML5 UP and released
for free under the Creative Commons license.' + #description = 'A fully responsive site template designed by HTML5 UP and released
for free under the Creative Commons license.' + logo = "fa-laptop" + #logo = "fa-gears" + # "/images/computational_genomics.jpg" + #logo = #"fa-diamond" + #copyright = "Untitled" + +[[params.social]] + medium = "twitter" + icon = "twitter" + link = "#" + +[[params.social]] + medium = "facebook" + icon = "facebook" + link = "#" + +[[params.social]] + medium = "instagram" + icon = "instagram" + link = "#" + +[[params.social]] + medium = "github" + icon = "github" + link = "#" + +[languages] +[languages.en] +languageName = "English" +weight = 1 + +#[languages.de] +#languageName = "Deutsch" +#weight = 2 +#title = "Dimension" +#description = 'A fully responsive site template designed by HTML5 UP and released
for free under the Creative Commons license.' diff --git a/content/01-overview.md b/content/01-overview.md new file mode 100644 index 0000000..315b9ff --- /dev/null +++ b/content/01-overview.md @@ -0,0 +1,29 @@ ++++ +title = "01-Overview" +weight = 20 +draft = false ++++ + +{{< figure class="image main" src="/images/computational_genomics.jpg" >}} + + +The **Krembil Centre for Neuroinformatics** is excited to offer a ***five-day summer course on the +integration of multi-scale neuroscience data*** - encompassing **genetics**, **brain structure and function**, and **cognition** – +designed to introduce participants to the concepts and methods behind psychiatric neuroinformatics. Daily sessions will +include both didactic teaching and hands-on tutorial components aimed at engaging critical thinking and developing +practical skills in key selected areas. Through a series of experiments using real-world data types, participants will +uncover the links between modalities of human genomics, neuronal electrophysiology, structural and functional +neuroimaging, and observed behaviour that KCNI scientists are integrating to study mental illness. + +All participants will take part in each full day of training. While the course is designed with a unified dataset and shared +series of tutorials, students will have the opportunity for *project-specific discussions*, *collaboration*, and *guidance* +outside of structured time. Lectures will be led by members and affiliates of the KCNI team, including faculty at the +University of Toronto’s Department of Psychiatry. + +This unique course will prepare participants to handle and analyze multiple data types in hopes that their own research +may benefit from collaborative, multi-modal approaches. Critically, participants will also learn about best practices for +data management and quality control in the context of integrative analysis. + + + + diff --git a/content/02-topics.md b/content/02-topics.md new file mode 100644 index 0000000..b572a82 --- /dev/null +++ b/content/02-topics.md @@ -0,0 +1,19 @@ ++++ +title = "02-Topics" +weight = 20 +draft = false ++++ + +{{< figure class="image main" src="/images/brain_circuit_modelling.jpg" >}} + +## Major topics covered: + +- **Psychiatric epidemiology** and framing the central issue of heterogeneity in mental illness +- **Psychiatric genetics**, translating germ-line genetic variation into individual brain function +- **Neuronal population activity** in cortical microcircuits, and the relationship to brain signals observable in clinic +- **Whole-brain** meso-scale structural and functional variation +- Bayesian models of **perception and learning;** applications to neuroimaging and electroencephalography +- **Population-based subtyping** and the identification of genetically determined neural dynamics in clinical cohorts +- **Putting it all together:** using whole-person data from each scale to identify subtypes of psychiatric patients with +distinct symptomatic and functional trajectories using biostatistical approaches + diff --git a/content/03-prerequisites.md b/content/03-prerequisites.md new file mode 100644 index 0000000..cec5abe --- /dev/null +++ b/content/03-prerequisites.md @@ -0,0 +1,19 @@ ++++ +title = "03-Prequisites" +weight = 20 +draft = false ++++ + +{{< figure class="image main" src="/images/whole_brain_modelling.jpg" >}} + +## Eligibility and prerequisites: + +Applications from graduate students, post-graduate research and clinical fellows, as well as early-career scientists will be considered. + +To ensure that all attendees can fully follow and benefit from the practical assignments, some minimal and demonstrable experience in R and Python is a minimum requirement. + +No previous formal training in psychiatry or informatics is necessary, however - and researchers from diverse backgrounds (e.g. medicine, computer science, biology, psychology, engineering etc.) are encouraged to apply. + + +**Total Enrolment:** 15 + diff --git a/content/04-instructors.md b/content/04-instructors.md new file mode 100644 index 0000000..d028daa --- /dev/null +++ b/content/04-instructors.md @@ -0,0 +1,22 @@ ++++ +title = "04-Instructors" +weight = 20 +draft = false ++++ + +{{< figure class="image main" src="/images/cognitive_network_modelling.jpg" >}} + +## Lead Instructors: + +Dr. Andreea Diaconescu +Dr. Erin Dickie +Dr. Daniel Felsky +Dr. Leon French +Dr. John Griffiths +Dr. Etay Hay +Dr. Shreejoy Tripathy +Dr. Joanna Yu + + + + diff --git a/content/05-about_us.md b/content/05-about_us.md new file mode 100644 index 0000000..2cba6ee --- /dev/null +++ b/content/05-about_us.md @@ -0,0 +1,26 @@ ++++ +title = "05-About Us" +weight = 20 +draft = false ++++ + +[Visit the KCNI website](krembilneuroinformatics.ca) + + +## Solving the human question of mental health + +The team at the Krembil Centre for Neuroinfomatics is putting today’s most advanced technology to work on this universal task that will unlock the power of personalized medicine to change the world. + + +With CAMH’s unique position as a data-driven organization and a leading mental health hospital, #KrembilNeuroinformatics is tackling the problem with an unprecedented approach. + + +Taking all of the data that exists in, about and around a person—everything from their cellular makeup to sleep patterns—to create personalized brain models and make predictions about mental health. + +What we are doing is unique across the globe and will lead to more precise treatments for patients, which means better outcomes and faster recovery. + + + + + + diff --git a/content/elements.md b/content/elements.md new file mode 100644 index 0000000..0690138 --- /dev/null +++ b/content/elements.md @@ -0,0 +1,251 @@ ++++ +title = "Elements" +weight = 50 +draft = true ++++ + +

Hugo shortcodes in theme

+ +{‌{< socialLinks >}} will get into {{< socialLinks >}} configured in config.toml. + +{‌{< gmaps pb="\" >}} will get a google map +{{< gmaps pb="!1m18!1m12!1m3!1d86456.59681285016!2d8.466675323953403!3d47.377433669132884!2m3!1f0!2f0!3f0!3m2!1i1024!2i768!4f13.1!3m3!1m2!1s0x47900b9749bea219%3A0xe66e8df1e71fdc03!2zWsO8cmljaA!5e0!3m2!1sde!2sch!4v1488248947910" >}} + +To get the pb parameter value, search the desired place on google maps and click the share button and copy/paste the pb parameter out of the iframe code. + +

Text

+ +This is **bold** and this is __strong__. This is *italic* and this is _emphasized_. +This is superscript text and this is subscript text. +This is underlined and this is code: for (;;) { ... }. +Finally, [this is a link to a markdown cheatsheet](https://beegit.com/markdown-cheat-sheet). + +> Not all markdown syntax is allowed but you can mix most html tags into the markdown text. + +--- +## Heading Level 2 +### Heading Level 3 +#### Heading Level 4 +##### Heading Level 5 +###### Heading Level 6 +--- + +#### Blockquote +> Fringilla nisl. Donec accumsan interdum nisi, quis tincidunt felis sagittis eget tempus euismod. Vestibulum ante ipsum primis in faucibus vestibulum. Blandit adipiscing eu felis iaculis volutpat ac adipiscing accumsan faucibus. Vestibulum ante ipsum primis in faucibus lorem ipsum dolor sit amet nullam adipiscing eu felis. + +#### Preformatted + + i = 0; + + while (!deck.isInOrder()) { + print 'Iteration ' + i; + deck.shuffle(); + i++; + } + + print 'It took ' + i + ' iterations to sort the deck.'; + +

Lists

+ +#### Unordered +* Dolor pulvinar etiam. +* Sagittis adipiscing. +* Felis enim feugiat. + +#### Ordered +1. Dolor pulvinar etiam. +2. Etiam vel felis viverra. +3. Felis enim feugiat. +4. Dolor pulvinar etiam. +5. Etiam vel felis lorem. +6. Felis enim et feugiat. + +#### Icons + + + +#### Actions + + + +

Table

+#### Default + +| Tables | Are | Cool | +| ------------- |:-------------:| -----:| +| col 3 is | right-aligned | $1600 | +| col 2 is | centered | $12 | +| zebra stripes | are neat | $1 | + +
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+Thank you for your message + + + + +{{< socialLinks >}} diff --git a/static/images/CAMH_Horz_logo_w_Krembil_Black.png b/static/images/CAMH_Horz_logo_w_Krembil_Black.png new file mode 100755 index 0000000..19e9311 Binary files /dev/null and b/static/images/CAMH_Horz_logo_w_Krembil_Black.png differ diff --git a/static/images/CAMH_Horz_logo_w_Krembil_Black_sm.png b/static/images/CAMH_Horz_logo_w_Krembil_Black_sm.png new file mode 100755 index 0000000..d4e723c Binary files /dev/null and b/static/images/CAMH_Horz_logo_w_Krembil_Black_sm.png differ diff --git a/static/images/CAMH_Horz_logo_w_Krembil_KO.png b/static/images/CAMH_Horz_logo_w_Krembil_KO.png new file mode 100755 index 0000000..de0290a Binary files /dev/null and b/static/images/CAMH_Horz_logo_w_Krembil_KO.png differ diff --git a/static/images/CAMH_Horz_logo_w_Krembil_KO_sm.png b/static/images/CAMH_Horz_logo_w_Krembil_KO_sm.png new file mode 100755 index 0000000..dd53d3f Binary files /dev/null and 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