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Index on the fly #63

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chasemc opened this issue Jul 7, 2023 · 0 comments

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chasemc commented Jul 7, 2023

-i, --index

    Create a BGZF index while compressing. Unless the -I option is used, this will have the name of the compressed file with .gzi appended to it.

sgnf/modules/local/dedup_and_index.nf

Lines 36 to 41 in 502e371

    
                           bgzip \\ 
        
                           --threads ${task.cpus} \\ 
        
                           -c > nr.faa.bgz 
        
               samtools \\ 
        
                   faidx \\ 
        
                   nr.faa.bgz

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