diff --git a/README.md b/README.md index e3178297..022d66f3 100644 --- a/README.md +++ b/README.md @@ -5,7 +5,7 @@ > Please note that this document is intended mostly for developers that want to use > the version of py4vasp provided on Github. If you just want to install py4vasp to -> use it, please follow the [official documentation](https://vasp.at/py4vasp). +> use it, please follow the [official documentation](https://vasp.at/py4vasp/latest). ## Installation diff --git a/docs/calculation.rst b/docs/Calculation.rst similarity index 83% rename from docs/calculation.rst rename to docs/Calculation.rst index dd06d7f7..68609203 100644 --- a/docs/calculation.rst +++ b/docs/Calculation.rst @@ -1,4 +1,4 @@ -calculation +Calculation =========== .. autoclass:: py4vasp.Calculation diff --git a/docs/conf.py b/docs/conf.py index 9a39f27f..28b4290f 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -18,11 +18,11 @@ # -- Project information ----------------------------------------------------- project = "py4vasp" -copyright = "2022, VASP Software GmbH" +copyright = "2023, VASP Software GmbH" author = "VASP Software GmbH" # The full version, including alpha/beta/rc tags -release = "0.6.0" +release = "0.7.0" # -- General configuration --------------------------------------------------- diff --git a/docs/convert.yaml b/docs/convert.yaml new file mode 100644 index 00000000..10f114e4 --- /dev/null +++ b/docs/convert.yaml @@ -0,0 +1,13 @@ +latest: + - dirhtml + - Calculation: + - dirhtml/Calculation + - raw: + - dirhtml/raw + - dirhtml/api/py4vasp.raw.* + - data: + - dirhtml/data + - dirhtml/api/py4vasp.data.* + - exception: + - dirhtml/exception + - dirhtml/api/py4vasp.exception.* diff --git a/docs/index.rst b/docs/index.rst index 85e1c827..d40d85e4 100644 --- a/docs/index.rst +++ b/docs/index.rst @@ -38,6 +38,16 @@ the simple installation above fails, you may need to use *conda* to install *mdt conda install -c conda-forge mdtraj pip install py4vasp +Alternatively, you can obtain the code from GitHub and install it. This will give you +the most recent version with all bugfixes. However, some features may only work once +the next VASP version is released. + +.. code-block:: bash + + git clone https://github.com/vasp-dev/py4vasp.git + cd py4vasp + pip install . + If these commands succeed, you should be able to use *py4vasp*. You can make a quick test of your installation running the following command @@ -91,7 +101,7 @@ a single line of code Under the hood, this will access the *vaspout.h5* file, because *py4vasp* knows where the output is stored after you ran VASP. It will read the relevant tags from the file and store them all in a Python dictionary. If you want to access particular -orbital projections, let's say the *p* orbitals, you can pass a ``select = "p"`` as +orbital projections, let's say the *p* orbitals, you can pass a ``selection = "p"`` as an argument to the routine. More generally, you can check how to use a function with >>> help(calc.dos.read) @@ -123,7 +133,7 @@ how you can apply *py4vasp* in your research. :maxdepth: 1 :caption: Contents: - calculation + Calculation control raw data diff --git a/poetry.lock b/poetry.lock index 92275d0a..1cc7250d 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,3 +1,5 @@ +# This file is automatically @generated by Poetry and should not be changed by hand. + [[package]] name = "alabaster" version = "0.7.12" @@ -5,6 +7,10 @@ description = "A configurable sidebar-enabled Sphinx theme" category = "dev" optional = false python-versions = "*" +files = [ + {file = "alabaster-0.7.12-py2.py3-none-any.whl", hash = "sha256:446438bdcca0e05bd45ea2de1668c1d9b032e1a9154c2c259092d77031ddd359"}, + {file = "alabaster-0.7.12.tar.gz", hash = "sha256:a661d72d58e6ea8a57f7a86e37d86716863ee5e92788398526d58b26a4e4dc02"}, +] [[package]] name = "appnope" @@ -13,6 +19,10 @@ description = "Disable App Nap on macOS >= 10.9" category = 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+content-hash = "3d29d4458076dad98b3e3d41524fc65ebf7cfd8ef0f20bbe09d5a7ab020c434f" diff --git a/pyproject.toml b/pyproject.toml index 055e1c08..465f1d72 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "py4vasp" -version = "0.6.0" +version = "0.7.0" description = "Tool for assisting with the analysis and setup of VASP calculations." authors = [ "VASP Software GmbH ", @@ -11,33 +11,36 @@ authors = [ ] license = "Apache-2.0" readme = "README.md" -homepage = "https://vasp.at/py4vasp" +homepage = "https://vasp.at/py4vasp/latest" repository = "https://github.com/vasp-dev/py4vasp" [tool.poetry.urls] "Support Forum" = "https://vasp.at/forum/" [tool.poetry.dependencies] -python = "^3.8" -numpy = "^1.23.0" -h5py = "^3.7.0" -pandas = "^1.4.3" -nglview = "^3.0.3" -ase = "^3.22.1" -mdtraj = "!=1.9.7,^1.9.6" -mrcfile = "^1.3.0" -plotly = "^5.9.0" -kaleido = "!=0.2.1.post1,^0.2.1" +# We actually do not want the <4 restriction here. This is due to requests 2.28.2 having +# this restriction, which will hopefully be released in a future release there +#python = ">=3.8" +python = ">=3.8,<4" +numpy = ">=1.23.0" +h5py = ">=3.7.0" +pandas = ">=1.4.3" +nglview = ">=3.0.3" +ase = ">=3.22.1" +mdtraj = "!=1.9.7,>=1.9.6" +mrcfile = ">=1.3.0" +plotly = ">=5.9.0" +kaleido = "!=0.2.1.post1,>=0.2.1" [tool.poetry.dev-dependencies] -pytest = "^7.1.2" -pytest-cov = "^3.0.0" -pylint = "^2.14.3" -Sphinx = "^5.0.2" -black = "^22.6.0" -hypothesis = "^6.48.1" -isort = "^5.10.1" -sphinx-automodapi = "^0.14.1" +pytest = ">=7.1.2" +pytest-cov = ">=3.0.0" +pylint = ">=2.14.3" +Sphinx = ">=5.0.2" +black = ">=22.6.0" +hypothesis = ">=6.48.1" +isort = ">=5.10.1" +sphinx-automodapi = ">=0.14.1" [tool.poetry.scripts] error-analysis = "py4vasp.scripts.error_analysis:main" diff --git a/src/py4vasp/__init__.py b/src/py4vasp/__init__.py index 7b9e1c4c..c496123b 100644 --- a/src/py4vasp/__init__.py +++ b/src/py4vasp/__init__.py @@ -4,5 +4,5 @@ from py4vasp._third_party.graph import plot from py4vasp._third_party.interactive import set_error_handling -__version__ = "0.6.0" +__version__ = "0.7.0" set_error_handling("Minimal") diff --git a/src/py4vasp/_calculation.py b/src/py4vasp/_calculation.py index 2cf13531..c0b9d485 100644 --- a/src/py4vasp/_calculation.py +++ b/src/py4vasp/_calculation.py @@ -1,17 +1,5 @@ # Copyright © VASP Software GmbH, # Licensed under the Apache License 2.0 (http://www.apache.org/licenses/LICENSE-2.0) -"""Provide the tools to manage VASP calculations. - -This is the main user interface if you want to simply investigate the results of VASP -calculations. Create a Calculation object associated with the VASP calculation that you -run. Then you can access the properties of that calculation via the attributes of the -object. For example you may use - ->>> calc = Calculation.from_path("path_to_your_calculation") ->>> calc.dos.plot() # to plot the density of states ->>> calc.magnetism.read() # to read the magnetic moments ->>> calc.structure.print() # to print the structure in a POSCAR format -""" import inspect import pathlib @@ -22,6 +10,19 @@ class Calculation: """Manage access to input and output of VASP calculations. + This is the main user interface if you want to simply investigate the results of VASP + calculations. Create a Calculation object associated with the VASP calculation that you + run. Then you can access the properties of that calculation via the attributes of the + object. + + Examples + -------- + + >>> calc = Calculation.from_path("path_to_your_calculation") + >>> calc.dos.plot() # to plot the density of states + >>> calc.magnetism.read() # to read the magnetic moments + >>> calc.structure.print() # to print the structure in a POSCAR format + Notes ----- To create new instances, you should use the classmethod :meth:`from_path` or