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environment.yml
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name: MuST
channels:
- pytorch
- nvidia
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=main
- _openmp_mutex=5.1=1_gnu
- _r-mutex=1.0.1=anacondar_1
- binutils_impl_linux-64=2.36.1=h193b22a_2
- binutils_linux-64=2.36=hf3e587d_33
- blas=1.0=mkl
- boltons=23.0.0=pyhd8ed1ab_0
- brotlipy=0.7.0=py310h7f8727e_1002
- bwidget=1.9.14=ha770c72_1
- bzip2=1.0.8=h7b6447c_0
- c-ares=1.18.1=h7f98852_0
- ca-certificates=2023.7.22=hbcca054_0
- cairo=1.16.0=hf32fb01_1
- certifi=2023.7.22=pyhd8ed1ab_0
- cffi=1.15.1=py310h5eee18b_3
- charset-normalizer=2.0.4=pyhd3eb1b0_0
- conda=23.7.3=py310hff52083_0
- conda-content-trust=0.1.3=py310h06a4308_0
- conda-package-handling=1.9.0=py310h5eee18b_1
- cryptography=38.0.1=py310h9ce1e76_0
- cuda=11.6.1=0
- cuda-cccl=11.6.55=hf6102b2_0
- cuda-command-line-tools=11.6.2=0
- cuda-compiler=11.6.2=0
- cuda-cudart=11.6.55=he381448_0
- cuda-cudart-dev=11.6.55=h42ad0f4_0
- cuda-cuobjdump=11.6.124=h2eeebcb_0
- cuda-cupti=11.6.124=h86345e5_0
- cuda-cuxxfilt=11.6.124=hecbf4f6_0
- cuda-driver-dev=11.6.55=0
- cuda-gdb=12.0.140=0
- cuda-libraries=11.6.1=0
- cuda-libraries-dev=11.6.1=0
- cuda-memcheck=11.8.86=0
- cuda-nsight=12.0.140=0
- cuda-nsight-compute=12.0.1=0
- cuda-nvcc=11.6.124=hbba6d2d_0
- cuda-nvdisasm=12.0.140=0
- cuda-nvml-dev=11.6.55=haa9ef22_0
- cuda-nvprof=12.0.146=0
- cuda-nvprune=11.6.124=he22ec0a_0
- cuda-nvrtc=11.6.124=h020bade_0
- cuda-nvrtc-dev=11.6.124=h249d397_0
- cuda-nvtx=11.6.124=h0630a44_0
- cuda-nvvp=12.0.146=0
- cuda-runtime=11.6.1=0
- cuda-samples=11.6.101=h8efea70_0
- cuda-sanitizer-api=12.0.140=0
- cuda-toolkit=11.6.1=0
- cuda-tools=11.6.1=0
- cuda-visual-tools=11.6.1=0
- curl=7.76.1=h979ede3_1
- ffmpeg=4.3=hf484d3e_0
- flit-core=3.6.0=pyhd3eb1b0_0
- fontconfig=2.14.1=hef1e5e3_0
- freetype=2.12.1=h4a9f257_0
- fribidi=1.0.10=h36c2ea0_0
- gcc_impl_linux-64=7.5.0=hda68d29_13
- gcc_linux-64=7.5.0=h47867f9_33
- gds-tools=1.5.1.14=0
- gettext=0.19.8.1=h73d1719_1008
- gfortran_impl_linux-64=7.5.0=h56cb351_20
- gfortran_linux-64=7.5.0=h78c8a43_33
- giflib=5.2.1=h5eee18b_1
- glib=2.68.4=h9c3ff4c_1
- glib-tools=2.68.4=h9c3ff4c_1
- gmp=6.2.1=h295c915_3
- gnutls=3.6.15=he1e5248_0
- graphite2=1.3.13=h58526e2_1001
- gsl=2.4=h14c3975_4
- gxx_impl_linux-64=7.5.0=h64c220c_13
- gxx_linux-64=7.5.0=h555fc39_33
- harfbuzz=2.4.0=h37c48d4_1
- icu=58.2=hf484d3e_1000
- idna=3.4=py310h06a4308_0
- intel-openmp=2021.4.0=h06a4308_3561
- jpeg=9e=h7f8727e_0
- jsonpatch=1.32=pyhd8ed1ab_0
- jsonpointer=2.0=py_0
- kernel-headers_linux-64=2.6.32=he073ed8_16
- krb5=1.17.2=h926e7f8_0
- lame=3.100=h7b6447c_0
- lcms2=2.12=h3be6417_0
- ld_impl_linux-64=2.36.1=hea4e1c9_2
- lerc=3.0=h295c915_0
- libcublas=11.9.2.110=h5e84587_0
- libcublas-dev=11.9.2.110=h5c901ab_0
- libcufft=10.7.1.112=hf425ae0_0
- libcufft-dev=10.7.1.112=ha5ce4c0_0
- libcufile=1.5.1.14=0
- libcufile-dev=1.5.1.14=0
- libcurand=10.3.1.124=0
- libcurand-dev=10.3.1.124=0
- libcurl=7.76.1=hc4aaa36_1
- libcusolver=11.3.4.124=h33c3c4e_0
- libcusparse=11.7.2.124=h7538f96_0
- libcusparse-dev=11.7.2.124=hbbe9722_0
- libdeflate=1.8=h7f8727e_5
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libffi=3.4.2=h6a678d5_6
- libgcc-ng=11.2.0=h1234567_1
- libgfortran-ng=7.5.0=h14aa051_20
- libgfortran4=7.5.0=h14aa051_20
- libglib=2.68.4=h174f98d_1
- libgomp=11.2.0=h1234567_1
- libiconv=1.16=h7f8727e_2
- libidn2=2.3.2=h7f8727e_0
- libnghttp2=1.43.0=h812cca2_1
- libnpp=11.6.3.124=hd2722f0_0
- libnpp-dev=11.6.3.124=h3c42840_0
- libnvjpeg=11.6.2.124=hd473ad6_0
- libnvjpeg-dev=11.6.2.124=hb5906b9_0
- libpng=1.6.37=hbc83047_0
- libssh2=1.10.0=ha56f1ee_2
- libstdcxx-ng=11.2.0=h1234567_1
- libtasn1=4.16.0=h27cfd23_0
- libtiff=4.5.0=hecacb30_0
- libunistring=0.9.10=h27cfd23_0
- libuuid=1.41.5=h5eee18b_0
- libwebp=1.2.4=h11a3e52_0
- libwebp-base=1.2.4=h5eee18b_0
- libxcb=1.15=h7f8727e_0
- libxml2=2.9.14=h74e7548_0
- lz4-c=1.9.4=h6a678d5_0
- make=4.3=hd18ef5c_1
- mkl=2021.4.0=h06a4308_640
- mkl-service=2.4.0=py310h7f8727e_0
- mkl_fft=1.3.1=py310hd6ae3a3_0
- mkl_random=1.2.2=py310h00e6091_0
- ncurses=6.3=h5eee18b_3
- nettle=3.7.3=hbbd107a_1
- nsight-compute=2022.4.1.6=0
- openh264=2.1.1=h4ff587b_0
- openssl=1.1.1v=h7f8727e_0
- pango=1.42.4=h7062337_4
- pcre=8.45=h9c3ff4c_0
- pillow=9.3.0=py310hace64e9_1
- pip=22.3.1=py310h06a4308_0
- pixman=0.40.0=h36c2ea0_0
- pluggy=1.0.0=py310h06a4308_1
- pycosat=0.6.4=py310h5eee18b_0
- pycparser=2.21=pyhd3eb1b0_0
- pyopenssl=22.0.0=pyhd3eb1b0_0
- pysocks=1.7.1=py310h06a4308_0
- python=3.10.8=h7a1cb2a_1
- python_abi=3.10=2_cp310
- pytorch=1.13.1=py3.10_cuda11.6_cudnn8.3.2_0
- pytorch-cuda=11.6=h867d48c_1
- pytorch-mutex=1.0=cuda
- r-base=3.6.1=haffb61f_2
- readline=8.2=h5eee18b_0
- requests=2.28.1=py310h06a4308_0
- ruamel.yaml=0.17.21=py310h5eee18b_0
- ruamel.yaml.clib=0.2.6=py310h5eee18b_1
- setuptools=65.5.0=py310h06a4308_0
- six=1.16.0=pyhd3eb1b0_1
- sqlite=3.40.0=h5082296_0
- sysroot_linux-64=2.12=he073ed8_16
- tk=8.6.12=h1ccaba5_0
- tktable=2.10=hb7b940f_3
- toolz=0.12.0=py310h06a4308_0
- torchaudio=0.13.1=py310_cu116
- torchvision=0.14.1=py310_cu116
- tqdm=4.64.1=py310h06a4308_0
- typing_extensions=4.4.0=py310h06a4308_0
- tzdata=2022g=h04d1e81_0
- urllib3=1.26.13=py310h06a4308_0
- wheel=0.37.1=pyhd3eb1b0_0
- xz=5.2.8=h5eee18b_0
- zlib=1.2.13=h5eee18b_0
- zstd=1.5.2=ha4553b6_0
- pip:
- aiohttp==3.8.3
- aiosignal==1.3.1
- anndata==0.8.0
- appdirs==1.4.4
- async-timeout==4.0.2
- attrs==22.2.0
- click==8.1.3
- contourpy==1.0.7
- cycler==0.11.0
- docker-pycreds==0.4.0
- exceptiongroup==1.1.3
- fonttools==4.38.0
- frozenlist==1.3.3
- fsspec==2023.1.0
- gitdb==4.0.10
- gitpython==3.1.30
- h5py==3.9.0
- igraph==0.10.4
- imageio==2.25.0
- iniconfig==2.0.0
- jinja2==3.1.2
- joblib==1.2.0
- kiwisolver==1.4.4
- leidenalg==0.10.1
- lightning-lite==1.8.6
- lightning-utilities==0.6.0.post0
- llvmlite==0.39.1
- louvain==0.8.0
- markupsafe==2.1.3
- matplotlib==3.6.3
- multidict==6.0.4
- munkres==1.1.4
- natsort==8.4.0
- networkx==3.0
- numba==0.56.4
- numpy==1.22.3
- packaging==23.0
- pandas==1.4.2
- pathtools==0.1.2
- patsy==0.5.3
- plotly==5.13.0
- pot==0.8.2
- protobuf==4.21.12
- psutil==5.9.4
- pynndescent==0.5.8
- pyparsing==3.0.9
- pytest==7.4.1
- python-dateutil==2.8.2
- python-igraph==0.10.4
- pytorch-lightning==1.9.0
- pytz==2022.7.1
- pyyaml==6.0
- rpy2==3.4.1
- scanpy==1.9.1
- scikit-learn==1.1.1
- scikit-misc==0.1.4
- scipy==1.8.1
- seaborn==0.12.2
- sentry-sdk==1.14.0
- session-info==1.0.0
- setproctitle==1.3.2
- smmap==5.0.0
- statsmodels==0.14.0
- stdlib-list==0.9.0
- tenacity==8.1.0
- texttable==1.6.7
- threadpoolctl==3.1.0
- tomli==2.0.1
- torchmetrics==0.11.1
- tzlocal==5.0.1
- umap-learn==0.5.3
- wandb==0.13.9
- yarl==1.8.2
prefix: /root/miniconda3