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Create and publish a docker image containing the evaluator script #107

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3 tasks
yuvipanda opened this issue Oct 9, 2024 · 2 comments
Closed
3 tasks

Create and publish a docker image containing the evaluator script #107

yuvipanda opened this issue Oct 9, 2024 · 2 comments
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@yuvipanda

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@yuvipanda
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We need an autopublishing docker image that contains the evaluator script and can be easily and consistently used by both us and end users.

Definition of done

  • A docker image is automatically published to quay.io with the evaluator script
  • GitHub actions will build and publish this image on each PR
  • This image can be private until Oct 23, at which point it will be made public
yuvipanda added a commit to janelia-cellmap/cellmap-segmentation-challenge that referenced this issue Oct 9, 2024
@yuvipanda
Add a dockerfile + a build GHA
4847a16 
- Use repo2docker-action (https://github.com/jupyterhub/repo2docker-action)
  for familiar (to 2i2c) tagging behavior
- Use python images as base, rather than micromamba because I
  could not get the micromamba image to work

Ref 2i2c-org/frx-challenges#107
@yuvipanda yuvipanda mentioned this issue Oct 9, 2024
Merged
@yuvipanda yuvipanda self-assigned this Oct 16, 2024
yuvipanda added a commit to janelia-cellmap/cellmap-segmentation-challenge that referenced this issue Oct 19, 2024
@yuvipanda
Add a dockerfile + a build GHA
555938b 
- Use repo2docker-action (https://github.com/jupyterhub/repo2docker-action)
  for familiar (to 2i2c) tagging behavior
- Use python images as base, rather than micromamba because I
  could not get the micromamba image to work

Ref 2i2c-org/frx-challenges#107
@jnywong
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jnywong commented Oct 28, 2024

I think this is related to #52 (comment)

@jnywong
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jnywong commented Nov 27, 2024

Closed by janelia-cellmap/cellmap-segmentation-challenge#35

@jnywong jnywong closed this as completed Nov 27, 2024
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