Skip to content

Better align `flags.jl` nomenclature with the SAMv1 specification

Codecov / codecov/patch failed Jan 22, 2024 in 1s

48.52% of diff hit (target 75.41%)

View this Pull Request on Codecov

48.52% of diff hit (target 75.41%)

Annotations

Check warning on line 103 in src/bam/record.jl

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/bam/record.jl#L103

Added line #L103 was not covered by tests

Check warning on line 136 in src/bam/record.jl

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/bam/record.jl#L136

Added line #L136 was not covered by tests

Check warning on line 65 in src/flags.jl

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/flags.jl#L64-L65

Added lines #L64 - L65 were not covered by tests

Check warning on line 74 in src/flags.jl

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/flags.jl#L73-L74

Added lines #L73 - L74 were not covered by tests

Check warning on line 83 in src/flags.jl

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/flags.jl#L82-L83

Added lines #L82 - L83 were not covered by tests

Check warning on line 102 in src/flags.jl

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/flags.jl#L101-L102

Added lines #L101 - L102 were not covered by tests

Check warning on line 111 in src/flags.jl

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/flags.jl#L110-L111

Added lines #L110 - L111 were not covered by tests

Check warning on line 148 in src/flags.jl

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/flags.jl#L147-L148

Added lines #L147 - L148 were not covered by tests

Check warning on line 157 in src/flags.jl

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/flags.jl#L156-L157

Added lines #L156 - L157 were not covered by tests

Check warning on line 166 in src/flags.jl

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/flags.jl#L165-L166

Added lines #L165 - L166 were not covered by tests

Check warning on line 175 in src/flags.jl

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/flags.jl#L174-L175

Added lines #L174 - L175 were not covered by tests

Check warning on line 184 in src/flags.jl

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/flags.jl#L183-L184

Added lines #L183 - L184 were not covered by tests

Check warning on line 193 in src/flags.jl

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/flags.jl#L192-L193

Added lines #L192 - L193 were not covered by tests

Check warning on line 202 in src/flags.jl

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/flags.jl#L201-L202

Added lines #L201 - L202 were not covered by tests

Check warning on line 211 in src/flags.jl

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/flags.jl#L210-L211

Added lines #L210 - L211 were not covered by tests

Check warning on line 221 in src/flags.jl

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/flags.jl#L220-L221

Added lines #L220 - L221 were not covered by tests

Check warning on line 230 in src/flags.jl

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/flags.jl#L229-L230

Added lines #L229 - L230 were not covered by tests

Check warning on line 239 in src/flags.jl

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/flags.jl#L238-L239

Added lines #L238 - L239 were not covered by tests

Check warning on line 212 in src/sam/readrecord.jl

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/sam/readrecord.jl#L212

Added line #L212 was not covered by tests