take in vep_config from run_vep

Co-authored-by: Nuno Agostinho <[email protected]>
Ensembl · Jul 4, 2023 · 6e1af6e · 6e1af6e
1 parent bc3a561
commit 6e1af6e
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/nextflow/nf_modules/merge_VCF.nf b/nextflow/nf_modules/merge_VCF.nf
@@ -22,7 +22,7 @@ process mergeVCF {
   cache 'lenient'
 
   input:
-  tuple val(original_vcf), path(vcf_files), path(index_files), val(index_type)
+  tuple val(original_vcf), path(vcf_files), path(index_files), path(vep_config), val(index_type)
   val output_dir
 
   output: