Merge branch 'postreleasefix/92' into release/92

Ensembl · Mar 29, 2018 · 85ae43b · 85ae43b
2 parents 23a5b4c + 2441aa6
commit 85ae43b
Showing 1 changed file with 4 additions and 3 deletions.
diff --git a/modules/Bio/EnsEMBL/VEP/AnnotationSource/File.pm b/modules/Bio/EnsEMBL/VEP/AnnotationSource/File.pm
@@ -285,8 +285,9 @@ sub annotate_InputBuffer {
   foreach my $chr(keys %by_chr) {
     foreach my $vf(@{$by_chr{$chr}}) {
       my ($vf_start, $vf_end) = ($vf->{start}, $vf->{end});
-      $parser->seek($self->get_source_chr_name($chr), $vf_start - 1, $vf_end + 1);
-      $parser->next();
+      if ($parser->seek($self->get_source_chr_name($chr), $vf_start - 1, $vf_end + 1)) {
+        $parser->next();
+      }
 
       while($parser->{record} && $parser->get_start <= $vf_end + 1) {
         $self->annotate_VariationFeature($vf);
@@ -416,4 +417,4 @@ sub _record_overlaps_VF {
   }
 }
 
-1;
+1;