Merge pull request #990 from dglemos/outputfactory_numberify_104

OutputFactory json - do not convert gene symbol to integer (104)
Ensembl · May 20, 2021 · f40c2a2 · f40c2a2
2 parents 09140ac + 30f7cb9
commit f40c2a2
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diff --git a/modules/Bio/EnsEMBL/VEP/Constants.pm b/modules/Bio/EnsEMBL/VEP/Constants.pm
@@ -53,7 +53,7 @@ use warnings;
 use base qw(Exporter);
 
 our $VEP_VERSION     = 104;
-our $VEP_SUB_VERSION = 1;
+our $VEP_SUB_VERSION = 2;
 
 our @EXPORT_OK = qw(
   @FLAG_FIELDS

diff --git a/modules/Bio/EnsEMBL/VEP/OutputFactory/JSON.pm b/modules/Bio/EnsEMBL/VEP/OutputFactory/JSON.pm
@@ -116,6 +116,7 @@ my %NUMBERIFY_EXEMPT = (
   'gene_id' => 1,
   'gene_symbol' => 1,
   'transcript_id' => 1,
+  'SYMBOL' => 1, # 'SYMBOL' is the gene symbol from SpliceAI plugin
 );
 
 my @LIST_FIELDS = qw(