Test automated LinkML validation #7

	---
	name: LinkML Linting GitHub Action
	on:
	- pull_request
	jobs:
	linkml:
	permissions:
	contents: write
	pull-requests: write
	name: LinkML Linting
	runs-on: ubuntu-latest
	steps:
	- name: Checkout
	uses: actions/checkout@v4
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v4
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install linkml
	- name: Run LinkML Linting
	run: \|
	## Results file header and basic formatting
	printf '# LinkML Linting Results \n' > linting-results.md
	printf "$(linkml --version) linting found the following issues: \n\n" >> linting-results.md
	printf "> [!WARNING]\n" >> linting-results.md

	## Lint the schema, and further format
	linkml lint src/mixs/schema/mixs.yaml >> linting-results.md
	sed -i 's/^ warning/> - warning /' linting-results.md
	# If the above check failed, post a comment on the PR explaining the failure
	- name: Post PR comment
	if: failure()
	uses: mshick/add-pr-comment@b8f338c590a895d50bcbfa6c5859251edc8952fc # v2
	with:
	message-path: linting-results.md
	repo-token: ${{ secrets.GITHUB_TOKEN }}
	allow-repeats: true

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