Add UK Biobank regions of interest #37
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| name: continuous integration | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| jobs: | |
| test: | |
| runs-on: self-hosted | |
| container: ghcr.io/halfpipe/halfpipe:latest | |
| steps: | |
| - name: Install dependencies | |
| shell: bash | |
| run: | | |
| mamba install -y git zip | |
| git --version | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Build atlases | |
| id: build_atlases | |
| shell: bash | |
| run: | | |
| freesurfer_license_base64="bGVhLndhbGxlckBjaGFyaXRlLmRlCjI3OTk5CiAqQ2R5NnNBR1BoQWlrCiBGU2t2cmduNFc0UXhRCg==" | |
| echo ${freesurfer_license_base64} \ | |
| | base64 --decode > ${FREESURFER_HOME}/license.txt | |
| pip install --verbose . | |
| atlas_dir=/tmp/atlases | |
| mkdir -p ${atlas_dir} | |
| cd ${atlas_dir} | |
| halfpipe-atlases-build | |
| zip_path=${atlas_dir}.zip | |
| zip ${zip_path} * | |
| echo "zip_path=${zip_path}" >> ${GITHUB_OUTPUT} | |
| - name: Upload atlases | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: atlases.zip | |
| path: ${{ steps.build_atlases.outputs.zip_path }} |