Environment: Google Colab Notebook: https://colab.research.google.com/drive/1jx7jFOiTBtE9NJgCEwXvbWmBKDG7ir5w?usp=sharing
- fastqc
- fastp
- kraken2
- kaiju (optional)
- krona
- MEGAHIT
- VirSorter2
- DeepVirFinder
- CheckV
-
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cloud-based metagenomics pipeline linking kraken2 and google colab using nextflow
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HebaF/metagenomics_pipeline
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cloud-based metagenomics pipeline linking kraken2 and google colab using nextflow
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