This is an example of running OMERO.server and OMERO.web in Docker.
OMERO.server is listening on APP_API_PORT OMERO.web is listening on APP_PORT
Log in as user root password WEB_ROOT_PASS.
APP_PORT=<web_app_port>
APP_API_PORT=<api_app_port>
APP_API_SSL_PORT=<api_ssl_app_port>
WEBSOCK_PORT=<websocket_port>
WEBSOCK_SSL_PORT=<websocket_ssl_port>
OMERO_DB_USER=<db_user_name>
OMERO_DB_PASS=<db_user_passw>
OMERO_DB_NAME=<omero_database>
OMERO_ROOT_PASS=<omero_root_password>
OMERO_DATA_DIR="/OMERO"
OMERO_DB_HOST=database
OMERO_DB_PORT=5432
OMERO_WEB_ALLOWED_HOST='["omeroweb","localhost"]'
OMERO_WEB_DEBUG=False
OMERO_WEB_SECURE__PROXY__SSL__HEADER='["HTTP_X_FORWARDED_PROTO", "https"]'
OMERO_WEB_ABSOLUT_URL='https://omero.example.com/'
OMERO_WEB_PUBLIC_ENABLE=True
OMERO_WEB_PUBLIC_USER='public-user'
OMERO_WEB_PUBLIC_PASSWORD=<public-user-password>First pull the latest major versions of the containers:
docker-compose pull
Then start the containers:
docker-compose up -d
docker-compose logs -f
For more configuration options see:
- https://github.com/ome/omero-server-docToker/blob/master/README.md
- https://github.com/ome/omero-web-docker/blob/master/README.md
The setup is supposed to sit behind a nginx reverse proxy. Passing request as http to the services. An easy deployment can be achieved by using nginx proxymanger which provides also certificates through letscrypt.
We suggest two proxy hosts for server and web seperatly.
Create a proxyhost with websocket support and just proxy_pass to the host running the doccker-compose stack with http and the websocket port. Should be working with all the options applicable by the ssl config tab.
Create a proxyhost poiting by http to the machine hosting the stack and the omero_web_port. Should be working with all the options applicable by the ssl config tab.
To make the web app api login useable u have to add this to the root or api location
location /api
proxy_set_header X-Forwarded-Proto $scheme;
proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for;