awesome-foundation-model-multiomic-papers

1. [2024 Nature Communications] scPair: Boosting single cell multimodal analysis by leveraging implicit feature selection and single cell atlases [paper]
2. [2025 Nature Genetics; DNA -> RNA-seq] Predicting RNA-seq coverage from DNA sequence as a unifying model of gene regulation [paper]
3. [2025 Nature; scATAC-seq -> scRNA-seq] A foundation model of transcription across human cell types [paper]
4. [2024 bioRxiv; scATAC-seq] Multiomic foundation model predicts epigenetic regulation by zero-shot [paper]