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* Add situation module * Add situation module * change prefix * Fix namespaces * add gfo-core module * add gfo-situation-simple pattern * update gfo-situation-simple pattern * update update gfo-situation-simple pattern * add gfo-situation-object pattern * add gfo-situation-object-extended pattern * Update gfo-core module * update gfo-core module * add gfo-presentic module * add gfo-presentic module * update gfo-core module * add gfo-timeExtended module * add gfo-connector-presentic-timeExtended module * delete gfo-base * Add situation patterns+examples from JAO paper * Corrections * Add new files to CI workflow * Fix import resolution * Remove CI test step for deleted ontology * Specify profile for reasoning tests * Update documentation * Replace robot `reason` calls with `report` * Disable report for gfo-light.owl again This file will be replaced in another pull request * Add some labels * Update import statement of gfo.owl * Add gfo.owl to tested files * Remove unnecessary prefixes * Merge imports of some modules before reporting * Add labels to examples * Add rdfs:labels to individuals * Correct auto generated labels that start with a number * Remove module files from PR * Remove module tests from PR * Temporarily reinstitute gfo-base.owl * Fix import * replace gfo-core by gfo-base * replace risk_sit_1_timespan by 10_months_timespan --------- Co-authored-by: auciteli <[email protected]> Co-authored-by: AlexU75 <[email protected]> Co-authored-by: Christoph Beger <[email protected]>
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,4 @@ | ||
| <?xml version="1.0" encoding="UTF-8" standalone="no"?> | ||
| <catalog prefer="public" xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog"> | ||
| <uri id="gfo-core" name="https://w3id.org/gfo/core/" uri="modules/gfo-core.ttl"/> | ||
| </catalog> |
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,20 @@ | ||
| <?xml version="1.0" encoding="UTF-8" standalone="no"?> | ||
| <catalog prefer="public" xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog"> | ||
| <uri id="Imports Wizard Entry" name="https://w3id.org/gfo/pattern/situation/simple" uri="../gfo-situation-simple.ttl"/> | ||
| <uri id="Imports Wizard Entry" name="https://w3id.org/gfo/pattern/situation/time-extended" uri="../gfo-situation-time-extended.ttl"/> | ||
| <uri id="Imports Wizard Entry" name="https://w3id.org/gfo/pattern/situation/object" uri="../gfo-situation-object.ttl"/> | ||
| <uri id="Imports Wizard Entry" name="https://w3id.org/gfo/pattern/situation/object-extended" uri="../gfo-situation-object-extended.ttl"/> | ||
| <uri id="Imports Wizard Entry" name="https://w3id.org/gfo/pattern/situation/presentic-simple" uri="../gfo-situation-presentic-simple.ttl"/> | ||
| <uri id="Imports Wizard Entry" name="https://w3id.org/gfo/pattern/situation/presentic-object" uri="../gfo-situation-presentic-object.ttl"/> | ||
| <uri id="Imports Wizard Entry" name="https://w3id.org/gfo/pattern/situation/presentic-object-reified-presentic-attributives" uri="../gfo-situation-presentic-object-reified-presentic-attributives.ttl"/> | ||
| <uri id="Imports Wizard Entry" name="https://w3id.org/gfo/pattern/situation/presentic-object-reified-presentic-objects" uri="../gfo-situation-presentic-object-reified-presentic-objects.ttl"/> | ||
| <uri id="Imports Wizard Entry" name="https://w3id.org/gfo/pattern/situation/simple-example" uri="gfo-situation-simple-example.ttl"/> | ||
| <uri id="Imports Wizard Entry" name="https://w3id.org/gfo/pattern/situation/time-extended-example" uri="gfo-situation-time-extended-example.ttl"/> | ||
| <uri id="Imports Wizard Entry" name="https://w3id.org/gfo/pattern/situation/object-example" uri="gfo-situation-object-example.ttl"/> | ||
| <uri id="Imports Wizard Entry" name="https://w3id.org/gfo/pattern/situation/object-extended-example" uri="gfo-situation-object-extended-example.ttl"/> | ||
| <uri id="Imports Wizard Entry" name="https://w3id.org/gfo/pattern/situation/presentic-simple-example" uri="gfo-situation-presentic-simple-example.ttl"/> | ||
| <uri id="Imports Wizard Entry" name="https://w3id.org/gfo/pattern/situation/presentic-object-example" uri="gfo-situation-presentic-object-example.ttl"/> | ||
| <uri id="Imports Wizard Entry" name="https://w3id.org/gfo/pattern/situation/presentic-object-reified-presentic-attributives-example" uri="gfo-situation-presentic-object-reified-presentic-attributives-example.ttl"/> | ||
| <uri id="Imports Wizard Entry" name="https://w3id.org/gfo/pattern/situation/presentic-object-reified-presentic-objects-example" uri="gfo-situation-presentic-object-reified-presentic-objects-example.ttl"/> | ||
| <group id="Folder Repository, directory=, recursive=true, Auto-Update=true, version=2" prefer="public" xml:base=""/> | ||
| </catalog> |
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modules/situation/examples/gfo-situation-object-example.ttl
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| @prefix : <https://w3id.org/gfo/situation/> . | ||
| @prefix dc: <http://purl.org/dc/elements/1.1/> . | ||
| @prefix owl: <http://www.w3.org/2002/07/owl#> . | ||
| @prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> . | ||
| @prefix rio: <https://w3id.org/rio/> . | ||
| @prefix xml: <http://www.w3.org/XML/1998/namespace> . | ||
| @prefix xsd: <http://www.w3.org/2001/XMLSchema#> . | ||
| @prefix bibo: <http://purl.org/ontology/bibo/> . | ||
| @prefix doap: <http://usefulinc.com/ns/doap#> . | ||
| @prefix foaf: <http://xmlns.com/foaf/0.1/> . | ||
| @prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> . | ||
| @prefix skos: <http://www.w3.org/2004/02/skos/core#> . | ||
| @prefix vann: <http://purl.org/vocab/vann/> . | ||
| @prefix terms: <http://purl.org/dc/terms/> . | ||
| @prefix rio-ex: <https://w3id.org/rio/example/> . | ||
| @prefix gfo-core: <https://w3id.org/gfo/core/> . | ||
| @base <https://w3id.org/gfo/situation/> . | ||
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| <https://w3id.org/gfo/pattern/situation/object-example> rdf:type owl:Ontology ; | ||
| owl:versionIRI <https://w3id.org/gfo/pattern/situation/object-example/release/2024-12-19> ; | ||
| owl:imports <https://w3id.org/gfo/pattern/situation/object> ; | ||
| dc:created "2024-12-11" ; | ||
| dc:creator "Alexandr Uciteli" , | ||
| "Christoph Beger" , | ||
| "Frank Löbe" , | ||
| "Franz Matthies" , | ||
| "Heinrich Herre" , | ||
| "Konrad Höffner" , | ||
| "Patryk Burek" , | ||
| "Ralph Schäfermeier" ; | ||
| dc:description "GFO-object-situation-example is an example for the object design pattern for modeling object situations."@en ; | ||
| dc:modified "2024-12-11" ; | ||
| dc:title "General Formal Ontology (object situation pattern example)"@en ; | ||
| terms:license <http://creativecommons.org/licenses/by/4.0/> ; | ||
| bibo:doi <https://zenodo.org/doi/10.5281/zenodo.5205419> ; | ||
| vann:preferredNamespacePrefix "gfo-object-situation-example" ; | ||
| vann:preferredNamespaceURI "https://w3id.org/gfo/pattern/situation/object-example" ; | ||
| doap:repository <https://github.com/Onto-Med/GFO> ; | ||
| rdfs:label "GFO object situation pattern example"@en ; | ||
| owl:versionInfo "2024-12-11" ; | ||
| foaf:homepage "https://github.com/Onto-Med/GFO" . | ||
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| ################################################################# | ||
| # Annotation properties | ||
| ################################################################# | ||
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| ### http://purl.org/dc/elements/1.1/created | ||
| dc:created rdf:type owl:AnnotationProperty . | ||
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| ### http://purl.org/dc/elements/1.1/creator | ||
| dc:creator rdf:type owl:AnnotationProperty . | ||
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| ### http://purl.org/dc/elements/1.1/description | ||
| dc:description rdf:type owl:AnnotationProperty . | ||
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| ### http://purl.org/dc/elements/1.1/modified | ||
| dc:modified rdf:type owl:AnnotationProperty . | ||
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| ### http://purl.org/dc/elements/1.1/title | ||
| dc:title rdf:type owl:AnnotationProperty . | ||
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| ### http://purl.org/dc/terms/license | ||
| terms:license rdf:type owl:AnnotationProperty . | ||
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| ### http://purl.org/ontology/bibo/doi | ||
| bibo:doi rdf:type owl:AnnotationProperty . | ||
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| ### http://purl.org/vocab/vann/preferredNamespacePrefix | ||
| vann:preferredNamespacePrefix rdf:type owl:AnnotationProperty . | ||
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| ### http://purl.org/vocab/vann/preferredNamespaceURI | ||
| vann:preferredNamespaceURI rdf:type owl:AnnotationProperty . | ||
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| ### http://usefulinc.com/ns/doap#repository | ||
| doap:repository rdf:type owl:AnnotationProperty . | ||
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| ### http://www.w3.org/2000/01/rdf-schema#comment | ||
| rdfs:comment rdf:type owl:AnnotationProperty . | ||
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| ### http://www.w3.org/2002/07/owl#versionInfo | ||
| owl:versionInfo rdf:type owl:AnnotationProperty . | ||
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| ### http://www.w3.org/2004/02/skos/core#altLabel | ||
| skos:altLabel rdf:type owl:AnnotationProperty . | ||
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| ### http://www.w3.org/2004/02/skos/core#definition | ||
| skos:definition rdf:type owl:AnnotationProperty . | ||
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| ### http://www.w3.org/2004/02/skos/core#example | ||
| skos:example rdf:type owl:AnnotationProperty . | ||
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| ### http://xmlns.com/foaf/0.1/homepage | ||
| foaf:homepage rdf:type owl:AnnotationProperty . | ||
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| ################################################################# | ||
| # Classes | ||
| ################################################################# | ||
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| ### https://w3id.org/rio/Patient | ||
| rio:Patient rdf:type owl:Class ; | ||
| rdfs:subClassOf gfo-core:Object , | ||
| [ rdf:type owl:Restriction ; | ||
| owl:onProperty gfo-core:hasQuality ; | ||
| owl:someValuesFrom rio:PatientAge | ||
| ] , | ||
| [ rdf:type owl:Restriction ; | ||
| owl:onProperty gfo-core:participatesIn ; | ||
| owl:someValuesFrom rio:RiskSituation | ||
| ] ; | ||
| rdfs:label "Patient"@en . | ||
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| ### https://w3id.org/rio/PatientAge | ||
| rio:PatientAge rdf:type owl:Class ; | ||
| rdfs:subClassOf gfo-core:Quality ; | ||
| rdfs:label "Patient age"@en . | ||
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| ### https://w3id.org/rio/RiskSeverity | ||
| rio:RiskSeverity rdf:type owl:Class ; | ||
| rdfs:subClassOf gfo-core:Quality ; | ||
| rdfs:label "Risk severity"@en . | ||
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| ### https://w3id.org/rio/RiskSituation | ||
| rio:RiskSituation rdf:type owl:Class ; | ||
| rdfs:subClassOf :Situation , | ||
| [ rdf:type owl:Restriction ; | ||
| owl:onProperty gfo-core:hasParticipantQuality ; | ||
| owl:someValuesFrom rio:PatientAge | ||
| ] ; | ||
| rdfs:label "Risk situation"@en . | ||
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| ################################################################# | ||
| # Individuals | ||
| ################################################################# | ||
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| ### https://w3id.org/rio/example/highly_severe | ||
| rio-ex:highly_severe rdf:type owl:NamedIndividual , | ||
| rio:RiskSeverity ; | ||
| rdfs:label "highly_severe"@en . | ||
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| ### https://w3id.org/rio/example/patient_1 | ||
| rio-ex:patient_1 rdf:type owl:NamedIndividual , | ||
| rio:Patient ; | ||
| gfo-core:hasQuality <https://w3id.org/rio/example/10_months> ; | ||
| gfo-core:participatesIn rio-ex:risk_sit1 ; | ||
| rdfs:label "patient_1"@en . | ||
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| ### https://w3id.org/rio/example/risk_sit1 | ||
| rio-ex:risk_sit1 rdf:type owl:NamedIndividual , | ||
| rio:RiskSituation ; | ||
| gfo-core:hasParticipantQuality <https://w3id.org/rio/example/10_months> ; | ||
| gfo-core:hasQuality rio-ex:highly_severe ; | ||
| rdfs:label "risk_sit1"@en . | ||
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| ### https://w3id.org/rio/example/10_months | ||
| <https://w3id.org/rio/example/10_months> rdf:type owl:NamedIndividual , | ||
| rio:PatientAge ; | ||
| rdfs:label "10_months"@en . | ||
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| ### Generated by the OWL API (version 4.5.29.2024-05-13T12:11:03Z) https://github.com/owlcs/owlapi |
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