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Use blast docker image with pandas installation
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skchronicles committed Feb 5, 2025
1 parent dd22d9b commit 9d2bc5c
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions workflow/rules/metavirs.smk
Original file line number Diff line number Diff line change
Expand Up @@ -1551,7 +1551,7 @@ rule aggregate_metaspades_viraltable:
rname='aggrmetaspadestable',
script=join(workpath, "workflow", "scripts", "create_matrix.py"),
threads: int(allocated("threads", "aggregate_metaspades_viraltable", cluster))
container: config['images']['metavirs']
container: config['images']['blast']
shell: """
# Create family-level viral matrices
# Family-level counts
Expand Down Expand Up @@ -1719,7 +1719,7 @@ rule aggregate_megahit_viraltable:
rname='aggrmegahittable',
script=join(workpath, "workflow", "scripts", "create_matrix.py"),
threads: int(allocated("threads", "aggregate_megahit_viraltable", cluster))
container: config['images']['metavirs']
container: config['images']['blast']
shell: """
# Create family-level viral matrices
# Family-level counts
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