Initial test on index.npjson

OpenSourceBrain · Mar 21, 2024 · f876044 · f876044
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commit f876044
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Showing 4 changed files with 19 additions and 1 deletion.
diff --git a/NetPyNE/HybridSmall/HybridSmall.py b/NetPyNE/HybridSmall/HybridSmall.py
@@ -115,3 +115,5 @@
 simConfig.analysis['plotRaster'] = {'orderInverse': False} #True # Whether or not to plot a raster
 simConfig.analysis['plotTraces'] = {'include': [1,51]} # plot recorded traces for this list of cells
 #simConfig.analysis['plotRatePSD'] = {'include': ['allCells', 'PYR_HH', 'PYR_Izhi'], 'smooth': 10} # plot recorded traces for this list of cells
+
+cfg = simConfig
diff --git a/NetPyNE/HybridSmall/index.npjson b/NetPyNE/HybridSmall/index.npjson
@@ -0,0 +1,6 @@
+{
+    "mod_folder": "../HybridSmall",
+    "simConfig": "HybridSmall.py",
+    "python_run": "init.py",
+    "netParams": "HybridSmall.py"
+}
diff --git a/NetPyNE/HybridSmall/init.py b/NetPyNE/HybridSmall/init.py
@@ -0,0 +1,10 @@
+"""
+init.py
+
+Starting script to run NetPyNE-based model.
+"""
+
+from netpyne import sim
+
+cfg, netParams = sim.loadFromIndexFile('index.npjson')
+sim.createSimulateAnalyze(netParams, cfg)
diff --git a/NetPyNE/UI/clean.sh b/NetPyNE/UI/clean.sh
@@ -1,2 +1,2 @@
-rm -rf x86_64 __pycache__
+rm -rf x86_64 arm64 __pycache__ *dat
 mv *mod *hoc *nrn_py *netpyne.py *nrn.py *dat *spikes *props *txt NET*nml LEMS*json test*json /tmp