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add lect08 and lect09 prereading
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kdkorthauer committed Feb 5, 2024
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11 changes: 11 additions & 0 deletions lect08-continuous/README.md
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# Lecture 8 Pre-reading/listening:

* [Section 18.3: Least Squares Estimates](http://rafalab.dfci.harvard.edu/dsbook/linear-models.html#lse) in "Introduction to Data Science" by Rafael Irizarry
* [Collinearity & Confounding](http://genomicsclass.github.io/book/pages/collinearity.html) section from Chapter 5 of "Biomedical Data Science" by Rafael Irizarry
* [This 2.5 minute audio clip introducing limma](https://www.youtube.com/embed/ZRet1oeGiUU?&end=150) from [Kasper Hansen's course "Bioconductor for Genomic Data Science"](https://kasperdanielhansen.github.io/genbioconductor/):

<p align="center">
<a href="https://www.youtube.com/embed/ZRet1oeGiUU?&end=150"><img src="img/limmavideoscreenshot.png" alt="limma video screenshot"></a>
</p>


14 changes: 14 additions & 0 deletions lect09-multipleTesting/README.md
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# Lecture 9 Pre-reading/watching:

* [This 14 minute screencast demonstrating design matrix construction and limma in action](https://www.youtube.com/embed/ZRet1oeGiUU?&start=150) (a continuation from last lecture's material) from Kasper Hansen's course ["Bioconductor for Genomic Data Science"](https://kasperdanielhansen.github.io/genbioconductor/):

<p align="center">
<a href="https://www.youtube.com/embed/ZRet1oeGiUU?&start=150"><img src="img/limmavideoscreenshot.png" alt="limma video screenshot"></a>
</p>

* Sections 7-9 in Chapter 6 (Hypothesis Testing) in ["Modern Statistics for Modern Biology"](http://web.stanford.edu/class/bios221/book/) by Susan Holmes and Wolfgang Huber:

* [6.7: Multiple testing](https://www.huber.embl.de/msmb/06-chap.html#multiple-testing)
* [6.8: The family wise error rate](https://www.huber.embl.de/msmb/06-chap.html#sec-testing-FWER)
* [6.9: The false discovery rate](https://www.huber.embl.de/msmb/06-chap.html#the-false-discovery-rate)

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