-
Notifications
You must be signed in to change notification settings - Fork 1
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
- Loading branch information
1 parent
867146b
commit 0a15335
Showing
2 changed files
with
25 additions
and
0 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,11 @@ | ||
# Lecture 8 Pre-reading/listening: | ||
|
||
* [Section 18.3: Least Squares Estimates](http://rafalab.dfci.harvard.edu/dsbook/linear-models.html#lse) in "Introduction to Data Science" by Rafael Irizarry | ||
* [Collinearity & Confounding](http://genomicsclass.github.io/book/pages/collinearity.html) section from Chapter 5 of "Biomedical Data Science" by Rafael Irizarry | ||
* [This 2.5 minute audio clip introducing limma](https://www.youtube.com/embed/ZRet1oeGiUU?&end=150) from [Kasper Hansen's course "Bioconductor for Genomic Data Science"](https://kasperdanielhansen.github.io/genbioconductor/): | ||
|
||
<p align="center"> | ||
<a href="https://www.youtube.com/embed/ZRet1oeGiUU?&end=150"><img src="img/limmavideoscreenshot.png" alt="limma video screenshot"></a> | ||
</p> | ||
|
||
|
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,14 @@ | ||
# Lecture 9 Pre-reading/watching: | ||
|
||
* [This 14 minute screencast demonstrating design matrix construction and limma in action](https://www.youtube.com/embed/ZRet1oeGiUU?&start=150) (a continuation from last lecture's material) from Kasper Hansen's course ["Bioconductor for Genomic Data Science"](https://kasperdanielhansen.github.io/genbioconductor/): | ||
|
||
<p align="center"> | ||
<a href="https://www.youtube.com/embed/ZRet1oeGiUU?&start=150"><img src="img/limmavideoscreenshot.png" alt="limma video screenshot"></a> | ||
</p> | ||
|
||
* Sections 7-9 in Chapter 6 (Hypothesis Testing) in ["Modern Statistics for Modern Biology"](http://web.stanford.edu/class/bios221/book/) by Susan Holmes and Wolfgang Huber: | ||
|
||
* [6.7: Multiple testing](https://www.huber.embl.de/msmb/06-chap.html#multiple-testing) | ||
* [6.8: The family wise error rate](https://www.huber.embl.de/msmb/06-chap.html#sec-testing-FWER) | ||
* [6.9: The false discovery rate](https://www.huber.embl.de/msmb/06-chap.html#the-false-discovery-rate) | ||
|