get up to date (#5)

[ngroebner]

• full test coverage (full test coverage #4)

• fixed reversal of link syntax

• add .flake8 and black/isort format

• change filename

• working EB energy sort

• add dev dependencies

• add nox.py

• add pyproject.toml and associated fixes

• rename

• coverage

• setup nox testing

• lint, flake8, black successful

• default sessions and add flake8-black

• add BLK

• initial config file

• test precommit nox

• Revert "initial config file"

This reverts commit 4286efb.

• init pre-commit-config.yaml

• Revert "init pre-commit-config.yaml"

This reverts commit 3435268.

• change flake8 conf to pyproj.toml

• add dev section

• add github action for ci

• add github action for ci

• add github action for ci

• add black button

• add pr to python-app

• limit flake8 directories

• break long lines

• flake8 errors will now break

• addtrailing newline

• dev dependencies to requirements-dev.txt

• 100% test coverage

• remove precommit hook; add pytest-cov to deps

• pytest --cov working from nox

• add build badge

• build badge

• change action name to build

• Update README.md

• tutorial working

• tutorial working

• remove *.h5 from git lfs

• untrack test h5 files

• dockerfile - copy tutorials to user directory

• Update README.md (add build button to readme #6)

• Update README.md

• Create geysers tutorial (Create geysers tutorial #7)

• add reference to dockerfile

• cap. Specufex to match list.yml in container-base

• change posn of SCOPED badge

• add link to scoped container

• fix reversed link syntax

• fixed reversal of link syntax

• add .flake8 and black/isort format

• change filename

• working EB energy sort

• add dev dependencies

• add nox.py

• add pyproject.toml and associated fixes

• rename

• coverage

• setup nox testing

• lint, flake8, black successful

• default sessions and add flake8-black

• add BLK

• initial config file

• test precommit nox

• Revert "initial config file"

This reverts commit 4286efb.

• init pre-commit-config.yaml

• Revert "init pre-commit-config.yaml"

This reverts commit 3435268.

• change flake8 conf to pyproj.toml

• add dev section

• add github action for ci

• add github action for ci

• add github action for ci

• add black button

• add pr to python-app

• limit flake8 directories

• break long lines

• flake8 errors will now break

• addtrailing newline

• Ci testing (Ci testing #3)

• fixed reversal of link syntax

• add .flake8 and black/isort format

• change filename

• working EB energy sort

• add dev dependencies

• add nox.py

• add pyproject.toml and associated fixes

• rename

• coverage

• setup nox testing

• lint, flake8, black successful

• default sessions and add flake8-black

• add BLK

• initial config file

• test precommit nox

• Revert "initial config file"

This reverts commit 4286efb.

• init pre-commit-config.yaml

• Revert "init pre-commit-config.yaml"

This reverts commit 3435268.

• change flake8 conf to pyproj.toml

• add dev section

• add github action for ci

• add github action for ci

• add github action for ci

• add black button

• add pr to python-app

• limit flake8 directories

• break long lines

• flake8 errors will now break

• addtrailing newline

• dev dependencies to requirements-dev.txt

• 100% test coverage

• remove precommit hook; add pytest-cov to deps

• pytest --cov working from nox

• geysers tutorial, lfs for waveform file

• geysers tutorial

• rebuild docs with geysers example

• untrack lfs

• code format

• add build badge

• build badge

• change action name to build

• tutorial working

• tutorial working

• remove *.h5 from git lfs

• untrack test h5 files

• dockerfile - copy tutorials to user directory

• Feature geysers tutorial (Feature geysers tutorial #8)

• add reference to dockerfile

• cap. Specufex to match list.yml in container-base

• change posn of SCOPED badge

• add link to scoped container

• fix reversed link syntax

• fixed reversal of link syntax

• add .flake8 and black/isort format

• change filename

• working EB energy sort

• add dev dependencies

• add nox.py

• add pyproject.toml and associated fixes

• rename

• coverage

• setup nox testing

• lint, flake8, black successful

• default sessions and add flake8-black

• add BLK

• initial config file

• test precommit nox

• Revert "initial config file"

This reverts commit 4286efb.

• init pre-commit-config.yaml

• Revert "init pre-commit-config.yaml"

This reverts commit 3435268.

• change flake8 conf to pyproj.toml

• add dev section

• add github action for ci

• add github action for ci

• add github action for ci

• add black button

• add pr to python-app

• limit flake8 directories

• break long lines

• flake8 errors will now break

• addtrailing newline

• Ci testing (Ci testing #3)

• fixed reversal of link syntax

• add .flake8 and black/isort format

• change filename

• working EB energy sort

• add dev dependencies

• add nox.py

• add pyproject.toml and associated fixes

• rename

• coverage

• setup nox testing

• lint, flake8, black successful

• default sessions and add flake8-black

• add BLK

• initial config file

• test precommit nox

• Revert "initial config file"

This reverts commit 4286efb.

• init pre-commit-config.yaml

• Revert "init pre-commit-config.yaml"

This reverts commit 3435268.

• change flake8 conf to pyproj.toml

• add dev section

• add github action for ci

• add github action for ci

• add github action for ci

• add black button

• add pr to python-app

• limit flake8 directories

• break long lines

• flake8 errors will now break

• addtrailing newline

• dev dependencies to requirements-dev.txt

• 100% test coverage

• remove precommit hook; add pytest-cov to deps

• pytest --cov working from nox

• geysers tutorial, lfs for waveform file

• geysers tutorial

• rebuild docs with geysers example

• untrack lfs

• code format

• add build badge

• build badge

• change action name to build

• tutorial working

• tutorial working

• remove *.h5 from git lfs

• untrack test h5 files

• dockerfile - copy tutorials to user directory

• Add tutorial (Add tutorial #9)

• add reference to dockerfile

• cap. Specufex to match list.yml in container-base

• change posn of SCOPED badge

• add link to scoped container

• fix reversed link syntax

• fixed reversal of link syntax

• add .flake8 and black/isort format

• change filename

• working EB energy sort

• add dev dependencies

• add nox.py

• add pyproject.toml and associated fixes

• rename

• coverage

• setup nox testing

• lint, flake8, black successful

• default sessions and add flake8-black

• add BLK

• initial config file

• test precommit nox

• Revert "initial config file"

This reverts commit 4286efb.

• init pre-commit-config.yaml

• Revert "init pre-commit-config.yaml"

This reverts commit 3435268.

• change flake8 conf to pyproj.toml

• add dev section

• add github action for ci

• add github action for ci

• add github action for ci

• add black button

• add pr to python-app

• limit flake8 directories

• break long lines

• flake8 errors will now break

• addtrailing newline

• Ci testing (Ci testing #3)

• fixed reversal of link syntax

• add .flake8 and black/isort format

• change filename

• working EB energy sort

• add dev dependencies

• add nox.py

• add pyproject.toml and associated fixes

• rename

• coverage

• setup nox testing

• lint, flake8, black successful

• default sessions and add flake8-black

• add BLK

• initial config file

• test precommit nox

• Revert "initial config file"

This reverts commit 4286efb.

• init pre-commit-config.yaml

• Revert "init pre-commit-config.yaml"

This reverts commit 3435268.

• change flake8 conf to pyproj.toml

• add dev section

• add github action for ci

• add github action for ci

• add github action for ci

• add black button

• add pr to python-app

• limit flake8 directories

• break long lines

• flake8 errors will now break

• addtrailing newline

• dev dependencies to requirements-dev.txt

• 100% test coverage

• remove precommit hook; add pytest-cov to deps

• pytest --cov working from nox

• geysers tutorial, lfs for waveform file

• geysers tutorial

• rebuild docs with geysers example

• untrack lfs

• code format

• add build badge

• build badge

• change action name to build

• Update README.md

• tutorial working

• tutorial working

• remove *.h5 from git lfs

• untrack test h5 files

• dockerfile - copy tutorials to user directory

• tutorial, CI (tutorial, CI #10)

• add reference to dockerfile

• cap. Specufex to match list.yml in container-base

• change posn of SCOPED badge

• add link to scoped container

• fix reversed link syntax

• fixed reversal of link syntax

• add .flake8 and black/isort format

• change filename

• working EB energy sort

• add dev dependencies

• add nox.py

• add pyproject.toml and associated fixes

• rename

• coverage

• setup nox testing

• lint, flake8, black successful

• default sessions and add flake8-black

• add BLK

• initial config file

• test precommit nox

• Revert "initial config file"

This reverts commit 4286efb.

• init pre-commit-config.yaml

• Revert "init pre-commit-config.yaml"

This reverts commit 3435268.

• change flake8 conf to pyproj.toml

• add dev section

• add github action for ci

• add github action for ci

• add github action for ci

• add black button

• add pr to python-app

• limit flake8 directories

• break long lines

• flake8 errors will now break

• addtrailing newline

• Ci testing (Ci testing #3)

• fixed reversal of link syntax

• add .flake8 and black/isort format

• change filename

• working EB energy sort

• add dev dependencies

• add nox.py

• add pyproject.toml and associated fixes

• rename

• coverage

• setup nox testing

• lint, flake8, black successful

• default sessions and add flake8-black

• add BLK

• initial config file

• test precommit nox

• Revert "initial config file"

This reverts commit 4286efb.

• init pre-commit-config.yaml

• Revert "init pre-commit-config.yaml"

This reverts commit 3435268.

• change flake8 conf to pyproj.toml

• add dev section

• add github action for ci

• add github action for ci

• add github action for ci

• add black button

• add pr to python-app

• limit flake8 directories

• break long lines

• flake8 errors will now break

• addtrailing newline

• dev dependencies to requirements-dev.txt

• 100% test coverage

• remove precommit hook; add pytest-cov to deps

• pytest --cov working from nox

• geysers tutorial, lfs for waveform file

• geysers tutorial

• rebuild docs with geysers example

• untrack lfs

• code format

• add build badge

• build badge

• change action name to build

• Update README.md

• tutorial working

• tutorial working

• remove *.h5 from git lfs

• untrack test h5 files

• dockerfile - copy tutorials to user directory

• Delete .nojekyll

• Create .nojekyll

• Docs directories (Ci testing #3)

• Delete .nojekyll

• Create .nojekyll

• reconfigure docs

• docs directories (docs directories #11)

• add reference to dockerfile

• cap. Specufex to match list.yml in container-base

• change posn of SCOPED badge

• add link to scoped container

• fix reversed link syntax

• fixed reversal of link syntax

• add .flake8 and black/isort format

• change filename

• working EB energy sort

• add dev dependencies

• add nox.py

• add pyproject.toml and associated fixes

• rename

• coverage

• setup nox testing

• lint, flake8, black successful

• default sessions and add flake8-black

• add BLK

• initial config file

• test precommit nox

• Revert "initial config file"

This reverts commit 4286efb.

• init pre-commit-config.yaml

• Revert "init pre-commit-config.yaml"

This reverts commit 3435268.

• change flake8 conf to pyproj.toml

• add dev section

• add github action for ci

• add github action for ci

• add github action for ci

• add black button

• add pr to python-app

• limit flake8 directories

• break long lines

• flake8 errors will now break

• addtrailing newline

• Ci testing (Ci testing #3)

• fixed reversal of link syntax

• add .flake8 and black/isort format

• change filename

• working EB energy sort

• add dev dependencies

• add nox.py

• add pyproject.toml and associated fixes

• rename

• coverage

• setup nox testing

• lint, flake8, black successful

• default sessions and add flake8-black

• add BLK

• initial config file

• test precommit nox

• Revert "initial config file"

This reverts commit 4286efb.

• init pre-commit-config.yaml

• Revert "init pre-commit-config.yaml"

This reverts commit 3435268.

• change flake8 conf to pyproj.toml

• add dev section

• add github action for ci

• add github action for ci

• add github action for ci

• add black button

• add pr to python-app

• limit flake8 directories

• break long lines

• flake8 errors will now break

• addtrailing newline

• dev dependencies to requirements-dev.txt

• 100% test coverage

• remove precommit hook; add pytest-cov to deps

• pytest --cov working from nox

• geysers tutorial, lfs for waveform file

• geysers tutorial

• rebuild docs with geysers example

• untrack lfs

• code format

• add build badge

• build badge

• change action name to build

• Update README.md

• tutorial working

• tutorial working

• remove *.h5 from git lfs

• untrack test h5 files

• dockerfile - copy tutorials to user directory

• Docs directories (Ci testing #3)

• Delete .nojekyll

• Create .nojekyll

• reconfigure docs

• redirect to html/index.html for github pages

• index html redirect

necessary so that github pages sees the html produced by sphinx sphinx-doc/sphinx#3382

• docs corrections

• redirect index.html (redirect index.html #12)

• add reference to dockerfile

• cap. Specufex to match list.yml in container-base

• change posn of SCOPED badge

• add link to scoped container

• fix reversed link syntax

• fixed reversal of link syntax

• add .flake8 and black/isort format

• change filename

• working EB energy sort

• add dev dependencies

• add nox.py

• add pyproject.toml and associated fixes

• rename

• coverage

• setup nox testing

• lint, flake8, black successful

• default sessions and add flake8-black

• add BLK

• initial config file

• test precommit nox

• Revert "initial config file"

This reverts commit 4286efb.

• init pre-commit-config.yaml

• Revert "init pre-commit-config.yaml"

This reverts commit 3435268.

• change flake8 conf to pyproj.toml

• add dev section

• add github action for ci

• add github action for ci

• add github action for ci

• add black button

• add pr to python-app

• limit flake8 directories

• break long lines

• flake8 errors will now break

• addtrailing newline

• Ci testing (Ci testing #3)

• fixed reversal of link syntax

• add .flake8 and black/isort format

• change filename

• working EB energy sort

• add dev dependencies

• add nox.py

• add pyproject.toml and associated fixes

• rename

• coverage

• setup nox testing

• lint, flake8, black successful

• default sessions and add flake8-black

• add BLK

• initial config file

• test precommit nox

• Revert "initial config file"

This reverts commit 4286efb.

• init pre-commit-config.yaml

• Revert "init pre-commit-config.yaml"

This reverts commit 3435268.

• change flake8 conf to pyproj.toml

• add dev section

• add github action for ci

• add github action for ci

• add github action for ci

• add black button

• add pr to python-app

• limit flake8 directories

• break long lines

• flake8 errors will now break

• addtrailing newline

• dev dependencies to requirements-dev.txt

• 100% test coverage

• remove precommit hook; add pytest-cov to deps

• pytest --cov working from nox

• geysers tutorial, lfs for waveform file

• geysers tutorial

• rebuild docs with geysers example

• untrack lfs

• code format

• add build badge

• build badge

• change action name to build

• Update README.md

• tutorial working

• tutorial working

• remove *.h5 from git lfs

• untrack test h5 files

• dockerfile - copy tutorials to user directory

• Docs directories (Ci testing #3)

• Delete .nojekyll

• Create .nojekyll

• reconfigure docs

• redirect to html/index.html for github pages

• docs corrections

• fix install url

• docs edits

• trying to fix contents in docs - api not there

• conda to mamba

• pull main specufex branch

• mathjax in usage.html

• re add full tests

• black format

• update docs usage.html

• rebuild docs after update usage.rst

• build and test directories to .gitignore

• Dockerfile.tutorial_local working locally

• switch to puproj.toml setup, revised dockerfile

• fixed local and regular dockerfiles, pyproj.toml dependencies

• remove waveforms.pkl

• remove waveforms.pkl

• Update python-app.yml to include python 3.11 test

• formatting

• remove locals

• updated tests

• format

• black format test_specufex.py

• Update pyproject.toml

• fix Dockerfile.tutorial

• rand.samp changed, jupyter and obspy deps added

• edit specufex/nmf.py line 83, update tuto

• update tuto

• update tuto

• update tuto

• remove copy

• update tuto

• update tuto

• download data

• comments and background added

• pin h5py to 3.10.0

h5py 3.11.0 was installing from source for the arm64 docker builds on the seisscoped repo. 3.10 worked previously so rolling back to try

• Update pyproject.toml to pin h5py to 3.10.0

---