[FIX] Update default folders dm_blacklist_rm works on

TIGRLab · Jan 29, 2025 · a505222 · a505222
1 parent 343aa7b
commit a505222
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diff --git a/assets/config_templates/main_config.yml b/assets/config_templates/main_config.yml
@@ -226,7 +226,7 @@ IgnoreHeaderFields:              # Dicom Header fields to exclude from gold
                                  # study's resources folder. (Optional).
                                  # Default: 'behav|\.edat2'
 
-# BlacklistDel: [nii, mnc, nrrd, resources]   # Indicate which directories to
+# BlacklistDel: [nii, bids, resources]        # Indicate which directories to
                                               # delete blacklisted data from.
-                                              # Default: [nii, mnc, nrrd,
+                                              # Default: [nii, bids,
                                               #           resources]
diff --git a/bin/dm_blacklist_rm.py b/bin/dm_blacklist_rm.py
@@ -93,7 +93,7 @@ def get_search_paths(config, user_paths=None):
             path_keys = config.get_key("BlacklistDel")
         except datman.config.UndefinedSetting:
             # Fall back to the default
-            path_keys = ['nii', 'mnc', 'nrrd', 'resources']
+            path_keys = ['nii', 'bids', 'resources']
     return path_keys
 
 

diff --git a/docs/datman_conf.rst b/docs/datman_conf.rst
@@ -102,7 +102,7 @@ Optional
   * Accepted values: A list of path names, where each path name has already
     been defined in `Paths`_.
   * Default value: If omitted ``dm_blacklist_rm`` will delete blacklisted
-    scans from ``nii``, ``mnc``, ``nrrd``, and ``resources``, if these
+    scans from ``nii``, ``bids``, and ``resources``, if these
     directories exist.
 
 Example