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Add additional context
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cthoyt committed Feb 3, 2025
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11 changes: 10 additions & 1 deletion src/bioregistry/data/bioregistry.json
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"biocontext": {
"prefix": "EC-CODE"
},
"comment": "The Nomenclature Committee website does not yet contain an official policy regarding the use of dashes in the hierarchical categorization of enzymes, so the Bioregistry's regular expression is permissive and accepts both EC identifiers with dashes (e.g. <code>2.3.-.-</code>) and without dashes (e.g., <code>2.3</code>). This means you may have to do post-processing of EC identifiers in data integration scenarios.",
"contact": {
"email": "[email protected]",
"github": "kaxelsen",
"name": "Kristian Axelsen",
"orcid": "0000-0003-3889-2879"
},
"description": "The Enzyme Nomenclature (also known as the Enzyme Commission Code) is a species-agnostic controlled vocabulary for specific enzymes and an associated hierarchical classification into 7 main categories.\n\nThe Enzyme Nomenclature is maintained by the [Nomenclature Committee](https://iubmb.org/about/committees/nomenclature-committee/) of the International Union of Biochemistry and Molecular Biology (IUBMB). A detailed history of the nomenclature since the 1950s can be found [here](https://iubmb.qmul.ac.uk/enzyme/history.html).\n\nThere are few notable resources providing access to the Enzyme Nomenclature:\n\n<table class=\"table table-striped\"><thead><tr><th>Website</td><th>Homepage</td><th>Notes</td></tr></thead><tbody><tr><td>ExplorEnz</td><td>https://www.enzyme-database.org</td><td>This is the resources officially recommended by IUBMB</td></tr><tr><td>IUBMB (via by Queen Mary)</td><td>https://iubmb.qmul.ac.uk/enzyme</td><td>This is a web-based version of the <a href=\"https://archive.org/details/enzymenomenclatu0000inte_d6c2\">1992 publication</a>.</td></tr><tr><td>IntEnz</td><td>https://www.ebi.ac.uk/intenz</td><td></td></tr><tr><td>ExPaSy</td><td>https://enzyme.expasy.org</td><td></td></tr></tbody></table>",
"edam": {
"description": "An Enzyme Commission (EC) number of an enzyme.",
"name": "EC number",
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"prefix": "ec-code",
"uri_format": "https://www.ebi.ac.uk/intenz/query?cmd=SearchEC&ec=$1"
},
"name": "Enzyme Commission Code",
"name": "Enzyme Nomenclature",
"owners": [
{
"name": "International Union of Biochemistry and Molecular Biology",
"partnered": false,
"ror": "00910ay07"
}
],
"pathguide": {
"abbreviation": "IntEnz",
"homepage": "http://www.ebi.ac.uk/intenz/index.html",
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