Generate parser from cwltool extensions

[GlassOfWhiskey]

This commit fixes #309 by generating the Python CWL parsers directly from the codegen branch of cwltool, including all the cwltool extensions in the parsers logic.

[codecov]

Codecov Report

Attention: Patch coverage is 84.21053% with 3 lines in your changes missing coverage. Please review.

Project coverage is 33.30%. Comparing base (70fbcd9) to head (5cb0a70).
Report is 1 commits behind head on main.

Files with missing lines	Patch %	Lines
cwl_utils/parser/cwl_v1_2_utils.py	81.25%	2 Missing and 1 partial ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #337      +/-   ##
==========================================
+ Coverage   32.70%   33.30%   +0.60%     
==========================================
  Files          29       29              
  Lines       31867    34864    +2997     
  Branches     8672     9396     +724     
==========================================
+ Hits        10421    11613    +1192     
- Misses      19024    20615    +1591     
- Partials     2422     2636     +214     

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[GlassOfWhiskey]

This version works with cwltool:Loop extension in StreamFlow

[mr-c]

Thanks for this! Can you open PRs to the codegen branches of https://github.com/common-workflow-language/cwl-v1.2 etc. to add the extensions there?

[GlassOfWhiskey]

Thanks for this! Can you open PRs to the codegen branches of https://github.com/common-workflow-language/cwl-v1.2 etc. to add the extensions there?

Hi @mr-c, I just did it. Would you like to release schema_salad, in order to fix the dependency?