Merge pull request darwin-eu-dev#262 from darwin-eu/master

sync

.github/workflows/R-CMD-check.yaml

@@ -51,3 +51,4 @@ jobs:
       - uses: r-lib/actions/check-r-package@v2
         with:
           upload-snapshots: true
+

.github/workflows/test-coverage.yaml

@@ -2,9 +2,9 @@
 # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
 on:
   push:
-    branches: [master, rc]
+    branches: [master]
   pull_request:
-    branches: [master, rc]
+    branches: [master]
 
 name: test-coverage
 
@@ -25,27 +25,23 @@ jobs:
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:
           extra-packages: any::covr
-          needs: coverage
+          needs: coverage 
 
       - name: Test coverage
+        if: runner.os == 'Linux'
         run: |
-          covr::codecov(
-            quiet = FALSE,
-            clean = FALSE,
-            install_path = file.path(Sys.getenv("RUNNER_TEMP"), "package")
+          cov <- covr::package_coverage(
+          quiet = FALSE,
+          clean = FALSE,
+          install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package")
           )
+          covr::to_cobertura(cov)
         shell: Rscript {0}
 
-      - name: Show testthat output
-        if: always()
-        run: |
-          ## --------------------------------------------------------------------
-          find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true
-        shell: bash
-
-      - name: Upload test results
-        if: failure()
-        uses: actions/upload-artifact@v3
+      - uses: codecov/codecov-action@v4
+        if: runner.os == 'Linux'
         with:
-          name: coverage-test-failures
-          path: ${{ runner.temp }}/package
+          file: ./cobertura.xml
+          plugin: noop
+          disable_search: true
+          token: ${{ secrets.CODECOV_TOKEN }}      

README.md

@@ -8,8 +8,7 @@
 [![Lifecycle:stable](https://img.shields.io/badge/lifecycle-stable-brightgreen.svg)](https://lifecycle.r-lib.org/articles/stages.html#stable)
 [![R-CMD-check](https://github.com/darwin-eu-dev/TreatmentPatterns/actions/workflows/R-CMD-check.yaml/badge.svg?branch=dev)](https://github.com/darwin-eu-dev/TreatmentPatterns/actions/workflows/R-CMD-check.yaml)
 [![CRAN](https://www.r-pkg.org/badges/version/TreatmentPatterns)](https://CRAN.R-project.org/package=TreatmentPatterns)
-[![Codecov test
-coverage](https://codecov.io/gh/darwin-eu-dev/TreatmentPatterns/branch/master/graph/badge.svg)](https://app.codecov.io/gh/darwin-eu-dev/TreatmentPatterns?branch=master)
+[![Codecov test coverage](https://codecov.io/gh/darwin-eu/TreatmentPatterns/branch/master/graph/badge.svg)](https://app.codecov.io/gh/darwin-eu/TreatmentPatterns?branch=master)
 
 <!-- badges: end -->