docs: Refactor project documentation and installation steps

- Rearranged steps in README.md for better clarity
- Added step to archive processed audio files
- Updated README with new installation step for configuration bootstrapping

README.md

@@ -72,19 +72,27 @@ The Transcribe Me application follows a straightforward workflow:
 
 ## :wrench: Usage
 
-1. Place your audio files in the `input` directory (or any other directory specified in the configuration).
-2. Run the application:
+1. Bootstrap your current directory with the configuration file:
 
    ```bash
-   transcribe-me
+   transcribe-me install
    ```
 
+2. Place your audio files in the `input` directory (or any other directory specified in the configuration).
+3. Run the application:
+
    ```bash
-   make transcribe
+   transcribe-me
    ```
 
    The application will transcribe each audio file in the input directory and save the transcriptions to the output directory. It will also generate summaries of the transcriptions using the configured models and save them to the output directory.
 
+4. (Optional) You can archive the input directory to keep track of the processed audio files:
+
+   ```bash
+   transcribe-me archive
+   ```
+
 ## :gear: Configuration
 
 The application uses a configuration file (`.transcribe.yaml`) to specify settings such as input/output directories, API keys, models, and their configurations. The configuration file is created automatically when you run the `transcribe-me install` command.