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yqiao/master #1248

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c9f6962
bump version to 1.12.0-rc.1
even1024 May 23, 2023
25f4e69
#1144 Unable to save the structure after clicking 'Save', an error ap…
even1024 May 31, 2023
836a09a
bump version to 1.12.0-rc.2
even1024 Jun 2, 2023
a4d536c
bump to Indigo 1.12.0
even1024 Jul 9, 2023
4634054
CI & changelog fix
even1024 Jul 9, 2023
206cd57
Update CHANGELOG.md
even1024 Jul 9, 2023
91d2d19
tzdata
even1024 Jul 9, 2023
0e3666a
Merge branch 'release/1.12' of github.com:epam/Indigo into release/1.12
even1024 Jul 9, 2023
75902f3
change username/password type.
sapiosciences-dev Jul 24, 2023
a9e4d5a
index type becoming a enum that can take in a suffix for various inde…
sapiosciences-dev Jul 25, 2023
f59b838
index type becoming a enum that can take in a suffix for various inde…
sapiosciences-dev Jul 25, 2023
f02b086
Added TermQuery
sapiosciences-dev Jul 26, 2023
48c49d8
Add delete by query support.
sapiosciences-dev Jul 26, 2023
fef5816
Add delete by query support.
sapiosciences-dev Jul 26, 2023
9b6afa7
Add a "-" separating type and name of index
sapiosciences-dev Jul 28, 2023
7f4d542
Allow index name to be empty for backward compatibility
sapiosciences-dev Jul 28, 2023
b0494b0
declare version as alpha
sapiosciences-dev Jul 28, 2023
ad44bf5
when doing SSS make sure we aromtize on query and post-processing per…
sapiosciences-dev Aug 10, 2023
0502b72
For reaction search we need to do automap() before testing when the f…
sapiosciences-dev Aug 15, 2023
f1cba52
remove reaction automap during registration and query.
sapiosciences-dev Aug 22, 2023
047a485
remove reaction automap during registration and query.
sapiosciences-dev Aug 24, 2023
38613b9
Merge branch 'yqiao/1.12'
sapiosciences-dev Aug 25, 2023
d4e5514
now using point-in-time query support with paging.
sapiosciences-dev Aug 29, 2023
5be722b
now using point-in-time query support with paging.
sapiosciences-dev Aug 30, 2023
5c3d07c
now using point-in-time query support with paging.
sapiosciences-dev Aug 31, 2023
4f821da
Merge branch 'yqiao/1.12' into yqiao/master
sapiosciences-dev Aug 31, 2023
992273e
now using point-in-time query support with paging.
sapiosciences-dev Aug 31, 2023
32332ae
Merge branch 'yqiao/1.12' into yqiao/master
sapiosciences-dev Aug 31, 2023
318040a
Fixed the case of deletion.
sapiosciences-dev Sep 1, 2023
c61ecb9
Merge branch 'yqiao/1.12' into yqiao/master
sapiosciences-dev Sep 1, 2023
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59 changes: 58 additions & 1 deletion CHANGELOG.md
Original file line number Diff line number Diff line change
@@ -1,3 +1,60 @@
# Indigo 1.12.0
Released 2023-07-09

## What's Changed

## Bugfixes
* #965 MDL Molfile v3000: when opening files containing 'Salts an Solvents', names are truncated and abbreviation is expanded
* #1036 SMILES import: general chiral specification labels (TH, AL, SP, TB, OH ) don't work
* #1051 Opening file with a superatom label saved in RXN v3000 format only the first part of the label is displayed
* #1114 Atoms of Benzene ring become Monoradicals when opened from file saved in Daylight SMARTS
* #1132 SMILES loader uninitialized heap fix
* #1102 When pasting Extended SMILES structure with stereochemistry there are two &1 centers instead of an ABS and an &1
* #1135 C library macro - va_end() is missing before return statement.
* #1126 Segfault when iterating CDX file from USPTO downloads
* #1144 Unable to save the structure after clicking 'Save', an error appears

## Improvements
* #1098 api: add method for copying RGroups

**Full Changelog**: https://github.com/epam/Indigo/compare/indigo-1.11.0...indigo-1.12.0


# Indigo 1.11.0
Released 2023-06-07

## What's Changed

## Features
* #1053 Split publish job in "Indigo CI" GitHub Action
* #310 Support stereo CIP calculation in Ket format
* #957 Support of Korean, Chinese and Japanese characters in Standalone.
* #995 Automated memory leaks testing

## Bugfixes
* #1044 SVG/PNG: Reaction arrows are not visible without structures at preview and in saved files
* #932 Reagents: When opening Daylight SMILES and Extended SMILES files with reagent the original structure is distorted
* #1084 Can't open mol v3000 files with 'S-Group Properties Type = Generic' and 'S-Group Properties Type = Multiple'
* #1083 Indigo Service: enable of using Indigo Options
* #910 MDL Molfile v3000 encoding: Automatic selection of MDL Molfile v3000 encoding doesn't work if the number of atoms (or bonds) exceeds 999
* #956 Copy Image: When inversion type is chosen in the atom's properties, it is not saved
* #955 Copy Image: Saved bonds does not have Reacting Center marks
* #1052 Set "Indigo Docker images preparation" GItHub Action to start manually only add version tag to Docker images
* #1064 Keep implicit hydrogens information in KET-format
* #1048 Memory leak in 3rd party library
* #1056 RXN2000/3000 should not serialize INDIGO_DESC fields for s-groups
* #1050 Memory leak in StringPool code
* #1031 Calculate CIP: Hovering over the label R/S displays Indigo system information
* #1049 Memory leak in the SMILES loader code
* #973 Daylight SMARTS: Error when save file in SMART format with reaction arrow and reagent
* #1017 imagoVersions is undefined
* #899 Add restrictions on size to be less than 1000
* #1015 Cannot test CDX export with certain files
* #944 CDX import: Greek letters, Celsius and Fahrenheit signs are replaced with question marks
* #1093 python binding memory leak from 1.8.0 (and still present in 1.10.0)

**Full Changelog**: https://github.com/epam/Indigo/compare/indigo-1.10.0...indigo-1.11.0

# Indigo 1.10.0
Released 2023-03-22

Expand Down Expand Up @@ -43,7 +100,7 @@ Released 2023-01-31
* Improve ssl bingo elastic by @MysterionRise in #901
* bingo: postgres: add support for Postgres 15, drop support for Postgres 10 by @mkviatkovskii in #903
* #521: core: replace MultiMap in MoleculeRGroupsComposition class by @loimu in #917
* #521: core: replace MultiMap in MolfileLoader class by @loimu in #911
* #521: core: replace MultiMap in MolfileLoader class by @loimu in #911 
* #929: fix auto-saving to CTAB v3000 by @mkviatkovskii in #931

**Full Changelog**: https://github.com/epam/Indigo/compare/indigo-1.8.0...indigo-1.9.0
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