add gloabl.env for snakemake-minimal compatibility

epigen · Sep 11, 2024 · 2915481 · 2915481
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diff --git a/README.md b/README.md
@@ -51,7 +51,7 @@ This project wouldn't be possible without the following software and their depen
 | pymcdm         | https://doi.org/10.1016/j.softx.2023.101368       |
 | scikit-learn   | http://jmlr.org/papers/v12/pedregosa11a.html      |
 | scipy          |  https://doi.org/10.1038/s41592-019-0686-2        |
-| Snakemake      | https://doi.org/10.12688/f1000research.29032.2    |
+| Snakemake (v8.20.1)      | https://doi.org/10.12688/f1000research.29032.2    |
 | umap-learn     | https://doi.org/10.21105/joss.00861               |
 
 

diff --git a/workflow/Snakefile b/workflow/Snakefile
@@ -1,3 +1,6 @@
+
+conda: "envs/global.yaml"
+
 ##### libraries #####
 import os
 import sys

diff --git a/workflow/envs/global.yaml b/workflow/envs/global.yaml
@@ -0,0 +1,7 @@
+channels:
+  - conda-forge
+  - bioconda
+  - nodefaults
+dependencies:
+  - numpy=2.0.1
+  - pandas=2.2.2