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update README and remove SDIR
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sreichl committed May 23, 2024
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2 changes: 1 addition & 1 deletion README.md
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# Unsupervised Analysis Workflow
A general purpose [Snakemake](https://snakemake.readthedocs.io/en/stable/) workflow to perform unsupervised analyses (dimensionality reduction and cluster analysis) and visualizations of high-dimensional data.

This workflow adheres to the module specifications of [MR.PARETO](https://github.com/epigen/mr.pareto), an effort to augment research by modularizing (biomedical) data science. For more details and modules check out the project's repository.
This workflow adheres to the module specifications of [MR.PARETO](https://github.com/epigen/mr.pareto), an effort to augment research by modularizing (biomedical) data science. For more details and modules check out the project's repository. Please consider **starring** and sharing modules that are interesting or useful to you, this helps others to find and benefit from the effort and me to prioritize my efforts!

**If you use this workflow in a publication, please don't forget to give credit to the authors by citing it using this DOI [10.5281/zenodo.8405360](https://doi.org/10.5281/zenodo.8405360).**

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3 changes: 0 additions & 3 deletions workflow/Snakefile
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Expand Up @@ -7,9 +7,6 @@ from snakemake.utils import min_version

min_version("7.15.2")

SDIR = os.path.realpath(os.path.dirname(srcdir("Snakefile")))
shell.prefix(f"set -eo pipefail;")

##### setup report #####
report: os.path.join("report", "workflow.rst")

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