Merge branch 'develop' of github.com:HenrikBengtsson/doFuture into de… #111
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| on: [push, pull_request] | |
| name: doFuture_tests_extra | |
| jobs: | |
| R-CMD-check: | |
| if: "! contains(github.event.head_commit.message, '[ci skip]')" | |
| timeout-minutes: 30 | |
| runs-on: ubuntu-latest | |
| name: ${{ matrix.config.r }} (${{ matrix.config.strategies }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - { r: "release", strategies: sequential } | |
| - { r: "release", strategies: multicore } | |
| - { r: "release", strategies: multisession } | |
| - { r: "release", strategies: "future.callr::callr" } | |
| - { r: "release", strategies: "future.batchtools::batchtools_local" } | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| RSPM: https://packagemanager.rstudio.com/cran/__linux__/jammy/latest | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| ## R CMD check | |
| _R_CHECK_LENGTH_1_CONDITION_: true | |
| _R_CHECK_LENGTH_1_LOGIC2_: true | |
| _R_CHECK_MATRIX_DATA_: true | |
| _R_CHECK_CRAN_INCOMING_: false | |
| ## Specific to 'rcmdcheck' | |
| RCMDCHECK_ERROR_ON: warning | |
| ## Specific to Futureverse | |
| # R_FUTURE_RNG_ONMISUSE: error | |
| _R_CHECK_FUTURE_STRATEGIES_: ${{ matrix.config.strategies }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| - name: Query dependencies | |
| run: | | |
| install.packages('remotes') | |
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | |
| writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | |
| shell: Rscript {0} | |
| - name: Cache R packages | |
| if: runner.os != 'Windows' | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | |
| restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | |
| - name: Install system dependencies (Linux) | |
| if: runner.os == 'Linux' | |
| env: | |
| RHUB_PLATFORM: linux-x86_64-ubuntu-gcc | |
| run: | | |
| Rscript -e "remotes::install_github('r-hub/sysreqs')" | |
| sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))") | |
| sudo -s eval "$sysreqs" | |
| - name: Install dependencies | |
| run: | | |
| install.packages(c("rcmdcheck", "BiocManager")) | |
| ## We have to manually install dependencies on Bioconductor | |
| BiocManager::install("BiocParallel") | |
| ## Dependencies of dependencies that are on Bioconductor | |
| BiocManager::install(c("Biobase")) | |
| remotes::install_deps(dependencies = TRUE) | |
| install.packages(".", repos=NULL, type="source") ## needed by parallel workers | |
| remotes::install_github("HenrikBengtsson/doFuture.tests.extra", dependencies=TRUE) | |
| shell: Rscript {0} | |
| - name: Session info | |
| run: | | |
| options(width = 100) | |
| pkgs <- installed.packages()[, "Package"] | |
| sessioninfo::session_info(pkgs, include_base = TRUE) | |
| shell: Rscript {0} | |
| - name: Check | |
| run: | | |
| git clone --depth 1 https://github.com/HenrikBengtsson/doFuture.tests.extra.git | |
| R CMD build --no-build-vignettes --no-manual doFuture.tests.extra | |
| R CMD check --no-codoc --no-examples --no-manual --ignore-vignettes --as-cran doFuture.tests.extra_*.tar.gz | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-doFuture.tests.extra-results | |
| path: check |