v2409

What's Changed

• Fix parallelization test on GitHub Actions by @gerlero in #1
• Update reaction test by @gerlero in #2
• Update README.md by @gerlero in #3
• Update parallelization tests by @gerlero in #4
• Fix specified velocity (darcyGradPressure) boundary condition by @gerlero in #5
• Rename internal moisture diffusivity field by @gerlero in #7
• Fix microscopic velocity computation in alphaDispersion by @gerlero in #8
• Add Linguist language overrides by @gerlero in #9
• Run CI on Ubuntu 20.04 by @gerlero in #11
• Support OpenFOAM v2212 by @gerlero in #12
• Update CI workflow by @gerlero in #13
• Add c_cpp_properties.json for VS Code by @gerlero in #14
• Add manual trigger to CI workflow by @gerlero in #15
• Add 'exhaustible' inlet boundary condition by @gerlero in #16
• Configure Dependabot version updates by @gerlero in #17
• Fix Dependabot configuration by @gerlero in #19
• Bump pyfoam from 2021.6 to 2022.9 in /tests by @dependabot in #18
• Build and push Docker image by @gerlero in #20
• Update README.md with Docker info by @gerlero in #21
• Support flexible installation paths by @gerlero in #22
• Install for all users in Docker images by @gerlero in #23
• Update Dockerfile by @gerlero in #24
• Fix wclean invocation in Dockerfile by @gerlero in #26
• Build multi-platform Docker images by @gerlero in #25
• Update Dockerfile by @gerlero in #27
• Add .devcontainer.json file by @gerlero in #28
• Update docker.yml by @gerlero in #29
• Fix typo by @gerlero in #30
• Update CI configuration by @gerlero in #31
• Update scripts by @gerlero in #32
• Update testing scripts by @gerlero in #33
• Add extra configuration files for VS Code by @gerlero in #34
• Update Docker support by @gerlero in #35
• Update Dockerfile by @gerlero in #36
• Update Dependabot configuration by @gerlero in #37
• Test on OpenFOAM v2306 by @gerlero in #38
• Build Docker images using OpenFOAM v2306 by @gerlero in #39
• Use latest tag for Docker images by @gerlero in #41
• Update requirements.txt by @gerlero in #42
• Bump pyfoam from 2022.9 to 2023.7 in /tests by @dependabot in #40
• Update handling of dispersion by @gerlero in #43
• Rename test_rect cases by @gerlero in #44
• Add support for retardation by @gerlero in #45
• Read ddt scheme for transport as ddt(C) by @gerlero in #46
• Update tests by @gerlero in #47
• Update Docker workflows by @gerlero in #49
• Simplify Dockerfile by @gerlero in #50
• Update .dockerignore by @gerlero in #51
• Set Open MPI oversubscribe env var inside parallel case run script by @gerlero in #52
• Update .devcontainer.json by @gerlero in #53
• Run test cases concurrently with pytest-asyncio-cooperative by @gerlero in #48
• Update tests by @gerlero in #54
• Update VS Code configuration files by @gerlero in #55
• Update .gitignore and .dockerignore files by @gerlero in #56
• Update exhaustible test case by @gerlero in #57
• Remove unused fields by @gerlero in #58
• Improve exhaustible boundary condition by @gerlero in #59
• Update dispersionTest run scripts by @gerlero in #60
• Update tests by @gerlero in #61
• Update Docker Hub description workflow by @gerlero in #62
• Update Docker Hub description workflow by @gerlero in #63
• Add extra compatibility checks by @gerlero in #64
• Update exhaustible test by @gerlero in #66
• Do not use parametrized fixtures with pytest-asyncio-cooperative by @gerlero in #67
• Build slimmer "run" Docker images by @gerlero in #68
• Update Docker workflows by @gerlero in #70
• Update Dockerfile by @gerlero in #71
• Update Docker workflow by @gerlero in #72
• Update README.md by @gerlero in #73
• Add welcome message to Docker images by @gerlero in #76
• Update README.md by @gerlero in #74
• Fix Docker welcome message by @gerlero in #77
• Update reaction rate computation by @gerlero in #78
• Update Docker workflow by @gerlero in #80
• Bump actions/checkout from 3 to 4 by @dependabot in #79
• Bump docker/setup-buildx-action from 2 to 3 by @dependabot in #81
• Bump docker/metadata-action from 4 to 5 by @dependabot in #82
• Bump docker/build-push-action from 4 to 5 by @dependabot in #83
• Bump docker/setup-qemu-action from 2 to 3 by @dependabot in #84
• Bump docker/login-action from 2 to 3 by @dependabot in #85
• Update pytest-asyncio-cooperative requirement from ==0.31.* to ==0.34.* in /tests by @dependabot in #86
• Update tests for pytest-asyncio-cooperative 0.34.0 by @gerlero in #87
• Test with OpenFOAM v2312 by @gerlero in #88
• Update Docker base image by @gerlero in #89
• Update lib Make/options files by @gerlero in #90
• Update retardation by @gerlero in #91
• Update flow models by @gerlero in #92
• Update porousMixture by @gerlero in #93
• Update reactions by @gerlero in #94
• Improve reaction support by @gerlero in #95
• Update reactions by @gerlero in #96
• Update reactions by @gerlero in #97
• Drop support for OpenFOAM < v2112 by @gerlero in #99
• Update dimension checking by @gerlero in #98
• Update reactions by @gerlero in #100
• Update dispersionTest tutorial by @gerlero in #103
• Implemented maxDeltaC for different species. by @DGHarispe in #102
• Update CI workflow by @gerlero in #104
• Add reactingMixer tutorial by @gerlero in #105
• Update tortuosity by @gerlero in #106
• Bump peter-evans/dockerhub-description from 3 to 4 by @dependabot in #107
• Update pytest requirement from ==7.* to ==8.* in /tests by @dependabot in #108
• Update tests by @gerlero in #109
• Update reactingMixer tutorial by @gerlero in #110
• Rename transportControl class template to TransportControl by @gerlero in #112
• Update reactingMixer tutorial by @gerlero in #113
• Update reactingMixer tutorial by @gerlero in #114
• Add dispersionTest tutorial case for porousMicroTransportFoam by @gerlero in #115
• Fix reactingMixer tutorials by @gerlero in #116
• Add sequentialDelivery tutorial cases by @gerlero in #117
• Fix sequentialDelivery tutorials by @gerlero in #118
• Fix reaction names in output by @gerlero in #119
• Fix sequentialDelivery tutorials by @gerlero in #120
• Fix reactingMixer tutorials by @gerlero in #121
• Update sequentialDelivery tutorials by @gerlero in #122
• Update Docker workflow by @gerlero in #123
• Update Docker workflow by @gerlero in #124
• Update Docker workflow by @gerlero in #125
• Update pytest-asyncio-cooperative requirement from ==0.34.* to ==0.35.* in /tests by @dependabot in #126
• Use aiofoam in tests by @gerlero in #127
• Bump aiofoam requirement by @gerlero in #128
• Bump pytest-asyncio-cooperative requirement by @gerlero in #129
• Bump aiofoam requirement by @gerlero in #130
• Update aiofoam requirement from <0.3,>=0.2.3 to >=0.2.3,<0.5 in /tests by @dependabot in #131
• Upgrade to foamlib by @gerlero in #132
• Update foamlib requirement from <0.2.0,>=0.1.0 to >=0.1.0,<0.3.0 in /tests by @dependabot in #133
• Use Ruff for linting and formatting tests by @gerlero in #134
• Update .devcontainer.json by @gerlero in #135
• Update foamlib requirement from <0.3.0,>=0.1.0 to >=0.1.0,<0.4.0 in /tests by @dependabot in #136
• Update numpy requirement from ==1.* to ==2.* in /tests by @dependabot in #137
• Bump docker/build-push-action from 5 to 6 by @dependabot in #138
• Test with OpenFOAM v2406 by @gerlero in #139
• Update Dockerfile by @gerlero in #140
• Update pytest-asyncio-cooperative requirement from <0.37,>=0.36 to >=0.37.0,<0.38 in /tests by @dependabot in #141
• Update CI workflow by @gerlero in #142
• Fix porousMedium log output by @gerlero in #143
• Update requirements.txt by @gerlero in #145
• Update Docker workflow by @gerlero in #146
• Update CI workflow by @gerlero in #147
• Update .devcontainer.json by @gerlero in #148
• Update requirements.txt by @gerlero in #149
• Update CI workflow by @gerlero in #150
• Update Dockerfile by @gerlero in #144
• Update README.md by @gerlero in #151
• Add preferred citation by @gerlero in #152
• Update README.md by @gerlero in #153
• New time-step control algorithm in TransportControl, implemented decision-making global state by @DGHarispe in #111
• Update Docker workflow by @gerlero in #154
• Update README.md by @gerlero in #155
• Update Docker workflow by @gerlero in #156

New Contributors

• @gerlero made their first contribution in #1
• @dependabot made their first contribution in #18
• @DGHarispe made their first contribution in #102

Full Changelog: https://github.com/gerlero/porousMicroTransport/commits/v2409