Replace HTTP URLs with HTTPS, avoid from pytest import raises/mark (m…

…aterialsproject#4021) * replace http with https, all committed changes verified * replace more http with https * replace expired abinit urls * replace scipy expired url * update NIST url and w3.org * update netCDF4 doc url * replace some http with https in unit test * remove debug leftover * add missing build doc dependency * rebuild docs * add invoke to docs dependency * Revert "rebuild docs" as it makes it impossible to review This reverts commit 47e4d59. * revert replace on io.exciting * revert replacement for structureNL metadata * fix from pytest import raises or mark * directly access MonkeyPatch when pytest is already imported * regenerate documents
gmatteo · Aug 30, 2024 · 934013b · 934013b
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diff --git a/ADMIN.md b/ADMIN.md
@@ -16,7 +16,7 @@ The general procedure for releasing `pymatgen` comprises the following steps:
 
 ## Initial setup
 
-Pymatgen uses [invoke](http://pyinvoke.org) to automate releases.
+Pymatgen uses [invoke](https://pyinvoke.org) to automate releases.
 You will also need `sphinx` and `doc2dash`.
 
 ```sh

diff --git a/CITATION.cff b/CITATION.cff
@@ -5,7 +5,7 @@ message: |
 
   In addition, some of pymatgen's functionality is based on scientific advances
   / principles developed by the computational materials scientists in our team.
-  Please refer to pymatgen's docs at http://pymatgen.org on how to cite them.
+  Please refer to pymatgen's docs at https://pymatgen.org on how to cite them.
 authors:
 - family-names: Ong
   given-names: Shyue Ping

diff --git a/dev_scripts/nist_codata.txt b/dev_scripts/nist_codata.txt
@@ -2,7 +2,7 @@
              Fundamental Physical Constants --- Complete Listing
 
 
-  From:  http://physics.nist.gov/constants
+  From:  https://physics.nist.gov/cuu/Constants/index.html
 
 
 

diff --git a/docs/apidoc/pymatgen.util.testing.rst b/docs/apidoc/pymatgen.util.testing.rst
diff --git a/docs/modules.html b/docs/modules.html
diff --git a/docs/pymatgen.alchemy.html b/docs/pymatgen.alchemy.html
diff --git a/docs/pymatgen.analysis.chemenv.connectivity.html b/docs/pymatgen.analysis.chemenv.connectivity.html
diff --git a/docs/pymatgen.analysis.chemenv.coordination_environments.coordination_geometries_files.html b/docs/pymatgen.analysis.chemenv.coordination_environments.coordination_geometries_files.html
diff --git a/docs/pymatgen.analysis.chemenv.coordination_environments.html b/docs/pymatgen.analysis.chemenv.coordination_environments.html
diff --git a/docs/pymatgen.analysis.chemenv.html b/docs/pymatgen.analysis.chemenv.html
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Expand Up		@@ -2,7 +2,7 @@
		Fundamental Physical Constants --- Complete Listing


		From: http://physics.nist.gov/constants
		From: https://physics.nist.gov/cuu/Constants/index.html



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