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fledge: Bump version to 2.1.3.9001 #1650

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Jan 9, 2025
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fledge: Bump version to 2.1.3.9001 #1650

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2 changes: 1 addition & 1 deletion DESCRIPTION
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Package: igraph
Title: Network Analysis and Visualization
Version: 2.1.3.9000
Version: 2.1.3.9001
Authors@R: c(
person("Gábor", "Csárdi", , "[email protected]", role = "aut",
comment = c(ORCID = "0000-0001-7098-9676")),
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309 changes: 309 additions & 0 deletions NEWS.md
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<!-- NEWS.md is maintained by https://fledge.cynkra.com, contributors should not edit this file -->

# igraph 2.1.3.9001

## Bug fixes

- Temporarily disable generating an interface for `igraph_simple_cycles_callback()`.
as the framework for handling callback functions is not yet present

## Refactoring

- Prepare for C core interface standardizing 'type' -\> 'types' in igraph_is_bipartite.

## vendor

- Update vendored sources to igraph/igraph@5216243786a5368ab14db9649008d1caca75f5af.

refactor: cleaner workaround in plfit for Windows 11 SDK bug where NAN is defined in a non-constant manner

- Update vendored sources to igraph/igraph@622f331dc9249b050bc6afbad2032e2c4e78de9e.

fix: remove unused converage exclusion

- Update vendored sources to igraph/igraph@c675c805a6ed436887ec0e6f9c6e18ca6d13ecad.

chore: update CodeCoverage.cmake from upstream https://github.com/bilke/cmake-modules/blob/master/CodeCoverage.cmake

- Update vendored sources to igraph/igraph@b25eda2dba6ccbcf5a47fe1cb77796a7f0f524d4.

fix: UBSan warning about negative shift when generating Q_0 hypercube graph

- Update vendored sources to igraph/igraph@e0dbe374e30adc654ad55a50d5aaf47ebc753908.

chore: update plfit to 1.0.0

- Update vendored sources to igraph/igraph@2cdc20a37fe048143ac54a3fa8288bb017402e7c.

chore: update plfit
fuzzer: use libxml2 2.13.5
chore(deps): bump codecov/codecov-action from 4 to 5

- Update vendored sources to igraph/igraph@082e2c6ba1a96d34d05a4e75a59c4f690aeca58d.

chore: update changelog \[skip ci\]

- Update vendored sources to igraph/igraph@8d242741a1cdc2686f180838d28f80cb96985c74.

chore: update plfit

- Update vendored sources to igraph/igraph@6c57e8c955d3c4d81160281d018dd3fa0a4052d8.

refactor: minor cleanup in maximal cliques

- Update vendored sources to igraph/igraph@d6348668ba511735110758dc4ee0423a983bf1ac.

refactor: remove extraneous whitespace before continuation backslashes in max clique template code

- Update vendored sources to igraph/igraph@9f06e4c34d8b1d533ba331ae581844a2ea9b565f.

chore: punctuate som error messages

- Update vendored sources to igraph/igraph@befc831fff74e4bae39743b1f83b38e6b3af0390.

fix: correct some implicit integer conversions

- Update vendored sources to igraph/igraph@5e3c56c6a10cb954b78c7441c5460a3c6ad4f5b7.

fix: eliminate some unused parameter warnings

- Update vendored sources to igraph/igraph@8cdfd787c2be8886cc4eac014f3004055a8c3ca0.

refactor: improved const-correctness in vector implementation

- Update vendored sources to igraph/igraph@ab123f04e487bc8bc1b93b9258e577e5f05d7ce9.

chore: update plfit, works around non-compile-time-constant NAN bug in recent Windows 11 SDKs

- Update vendored sources to igraph/igraph@833672f02161051010d1b633b23be53765663372.

chore: restrict workaround to CMake 3.31.0 USE_TERMINAL bug to the single affected CMake version

- Update vendored sources to igraph/igraph@5e734a2c1211d017088a882ed121f25956e20189.

ci: support for controlling the use of plfit and improve alpine jon

- Update vendored sources to igraph/igraph@ed43183a2eeb9e604addf1dc672908b7b845cec7.

refactor: some cleanup in shortest path implementations

- Update vendored sources to igraph/igraph@2412652489721e41617e3d9719b02923da31ab0d.

chore: devcontainer update

- Update vendored sources to igraph/igraph@48ff9407b74cca8e50f1d256b039452e40662985.

chore: link to relevant CMake bug regarding policy CMP0175

- Update vendored sources to igraph/igraph@3631b1d5a0f3b7e49463f89cbbba762b24d9383d.

refactor: clean up igraph_path_length_hist()

- Update vendored sources to igraph/igraph@6fd3903c84d741d4bed0284c85db277836a4af79.

refactor: clean up igraph_vertex_path_from_edge_path() and clarify that it is suitable for any walk, not just paths

- Update vendored sources to igraph/igraph@379ef39bb89f41ba6d0ff39a86039571796e3bde.

refactor: eliminate redundant pointer variable in GraphML reader

- Update vendored sources to igraph/igraph@af14d843991f9e4f2894477a8644cfbd27a13d11.

fix: mark global variables in GraphML parser as static

- Update vendored sources to igraph/igraph@05979d3b2c85c12334ce5d3508dd473cdfa3c6f5.

doc: improve maximal clique docs

- Update vendored sources to igraph/igraph@41d855d470c7e5cca40bb8a2e294656504aa2a56.

chore: update changelog

- Update vendored sources to igraph/igraph@a2109c50681c0b444285cf40d09a602047141ea1.

docs: more cross-referencing

- Update vendored sources to igraph/igraph@62881320e766e8df227839a67078dd22e909cd2d.

docs: fix typo

- Update vendored sources to igraph/igraph@3673a0a9c3b3604ab1975432f6bbeed697dc9f7c.

doc: more cross-linking

- Update vendored sources to igraph/igraph@e842e658993df7305aec9d805baf36008aec9e4d.

fix: compatibility with CMake 3.31

- Update vendored sources to igraph/igraph@2f0e27c9c19e8e7eb9b3b2df01ae3186f1e62470.

ci: use modern CMake features for CTest parallelization

- Update vendored sources to igraph/igraph@a16619502b6c21d4883eeee992794b271e1035d9.

chore: updated changelog

- Update vendored sources (tag 0.10.15) to igraph/igraph@635b432eff0a89580ac9bb98068d2fbc8ef374f2.

chore: updated changelog

- Update vendored sources to igraph/igraph@563aa5e8569b85a73680752bd8ad5624575610b6.

chore: run pre-commit hooks

- Update vendored sources to igraph/igraph@f32e621f3833556e361a3078ab9e046f6acdd9b8.

chore: bump VERSION property in shared library

- Update vendored sources to igraph/igraph@26d3718b364167dd0528c63a35f9e5e513df6845.

refactor: do not use vector_get() in simple cycle finder

- Update vendored sources to igraph/igraph@cd7bcd9d9b9bfd9acd83dace6438507947297ce2.

refactor: cleaner parameter ordering in igraph_i_simple_cycles_circuit()

- Update vendored sources to igraph/igraph@dafe829b811f9344fb1f5a8412a100b586817e3f.

refactor: support specifying a minimum cycle length in `igraph_simple_cycles()`

- Update vendored sources to igraph/igraph@c263ce7541e904f71dbcb7e06ca0dfb08cbf2ed7.

interface: loops=True default for igraph_degree()

- Update vendored sources to igraph/igraph@f6ec07e8a9425f09259bd04b0fefe1ebdfe64067.

chore: updated contributors list

- Update vendored sources to igraph/igraph@a6441e7a00118988aeac528910d6b9d417aec364.

chore: trim trailing whitespace in interface file

- Update vendored sources to igraph/igraph@042a2c5230e8008b976a5ad0f04fe2b3e00cde97.

interface: add missing interface for igraph_get_isomorphisms_vf2_callback()

- Update vendored sources to igraph/igraph@797ab4fa6c9a119ff12af1f5d6080de8d1e4f142.

interface: mark all callback extra parameters and some callback functions as optional

- Update vendored sources to igraph/igraph@518fcc4165c420b9f4958d1496a607d325d69826.

interface: add default parameter values for fundamental_cycles() and minimum_cycle_basis()

- Update vendored sources to igraph/igraph@d9c328f61e31d93681e2c0894ace18ad59a5dba2.

interface: even more missing OPTIONAL markers

- Update vendored sources to igraph/igraph@3b9cb6ff078cf4e7fdb2be593811e50b97232fea.

interface: add more missing OPTIONAL markers

- Update vendored sources to igraph/igraph@5512e864ecddc76af4a7c93b7e4ebfd7030cc404.

fix: some weights parameters were incorrectly marked as OPTIONAL in functions.yaml

- Update vendored sources to igraph/igraph@4b208d877de74a730e8707e94ebad5318cf308ae.

fix: mark some optional weight parameters as OPTIONAL in functions.yaml

- Update vendored sources to igraph/igraph@d0616a433134dcb6ae6f3195c5a72e456f5a4809.

fix: type -\> types in is_bipartite interface

- Update vendored sources to igraph/igraph@c3f9a823d8bc7fa210df4e1225c86226195e1f16.

fix: some BIPARTITE_TYPES parameters were incorrectly marked as optional

- Update vendored sources to igraph/igraph@34f8d72f3c702aa490644244ebee98b836ac45d1.

refactor: use OPTIONAL instead of =NULL in interfaces

- Update vendored sources to igraph/igraph@5c74801197212e9908f561139af3141410cf49d2.

feat: functionality for listing all simple cycles

- Update vendored sources to igraph/igraph@f5d79f2eb90c2597ea0e33c60d0e6a083efc4abc.

interface: default OUT mode for igraph_find_cycle()

- Update vendored sources to igraph/igraph@992f77abdbe675c2d0dd2926536c57496b720c81.

refactor: better error reporting for igraph_find_cycle()

- Update vendored sources to igraph/igraph@207f0bb1624bb73a9d1f2f979bf2b2bfde60626f.

chore: some copyright header cleanup in public headers

- Update vendored sources to igraph/igraph@8eaa07489a27f55cdf8421bbbb8e34b60eacd1bf.

refactor: minor readability improvements

- Update vendored sources to igraph/igraph@5cd6552bf00d6a774cdd64b5fabf2c79524ccfc7.

fix: add some missing IGRAPH_CHECKs

- Update vendored sources to igraph/igraph@82d35eebd8c73a9476d5e2d205a851b4ebfc8eda.

refactor: minor readability cleanup in matching functions

- Update vendored sources to igraph/igraph@01db8e25a80dd8f93ccb9d7a6f39379a57fdc3ad.

fix: `igraph_bipartite_projection_size()` now validates the bipartite `types` vector

- Update vendored sources to igraph/igraph@7284ee015d2662ca4e1ab62e3ce17ff34df24430.

chore: fix some spelling mistakes

- Update vendored sources to igraph/igraph@1d6ef7c417e38c881ef325d8c553ccf767db6b6f.

refactor: minor readability cleanup in igraph_decompose()

- Update vendored sources to igraph/igraph@0878f577d45ff5fdc33e0ecacc542277a8024af9.

doc: more documentation improvements

- Update vendored sources to igraph/igraph@bd7b3a82bb9db038ebfcc046319947c5ea196660.

doc: several documentation improvements and cross-referencing

- Update vendored sources to igraph/igraph@764954eda823c40341d302ac290629d96d5bd9bf.

chore: fix typo in error message

- Update vendored sources to igraph/igraph@6c0a4310474e9935acc557673e1a2f9ec0dd6db3.

docs: community_optimal_modulairty() does support directed graphs

- Update vendored sources to igraph/igraph@59d71d001308d424782a386fea3069cf880d82a2.

chore: do not warn about unknown warning options with legacy Intel compiler

- Update vendored sources to igraph/igraph@7a0d4918abfd34c38eb2fdeec4460b2370cea1c9.

fix: validate sample size in igraph_motifs_randesu_estimate()

- Update vendored sources to igraph/igraph@e7820cf969a8c63d6564452f73246c044ee99ba9.

chore: fix typo in comment

## hack

- Provide NULL default for types argument of `bipartite_projection_size()`.
This parameter is optional in R, but not in C. Therefore the C interface definition doesn't provide a default or OPTIONAL marker.

## Uncategorized

- Vendor: Update vendored sources to igraph/igraph@ae93a3a2431bb6fd8a1feb687cac32feef63730b.

- Vendor: Update vendored sources to igraph/igraph@e940ab737938dfdd4518164c866b2599af40856f.

- Vendor: Update vendored sources to igraph/igraph@3ac79b81bdf835460445ca6163f25e6559ec9958.

- Vendor: Update vendored sources to igraph/igraph@f7b77f9e9cb4d670886b7e15e876c5549250befa.

- Vendor: Update vendored sources to igraph/igraph@a662f79d46970bbcc2888e69dce5daa3fee8906e.

- Vendor: Update vendored sources to igraph/igraph@a1389c191ac42b5ed3fcaf341ff3235c9f6f19f3.

- Vendor: Update vendored sources to igraph/igraph@12299c4928f9f463c06d0b46752df69a6d67c289.


# igraph 2.1.3.9000

- Switching to development version.
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