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../../combozzle.py |
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[mtcampbe@lassen30:3d]$ pwd | ||
/g/g17/mtcampbe/ceesd-timing/drivers_bozzle/dist_scale/3d | ||
[mtcampbe@lassen30:3d]$ rm run_config.yaml | ||
[mtcampbe@lassen30:3d]$ ln -s run_config/weak_8.yaml ./run_config.yaml | ||
[mtcampbe@lassen30:3d]$ jsrun -g 1 -a 1 -n 8 bash -c 'POCL_CACHE_DIR=$POCL_CACHE_DIR_ROOT/$$ python -O -m mpi4py ./combozzle.py -i run_config.yaml' | ||
/p/gpfs1/mtcampbe/CEESD/AutomatedTesting/MIRGE-Timing/timing/emirge.fusion/grudge/grudge/array_context.py:59: UserWarning: Your loopy and meshmode branches are mismatched. Please make sure that you have the https://github.com/kaushikcfd/loopy/tree/pytato-array-context-transforms branch of loopy. | ||
warn("Your loopy and meshmode branches are mismatched. " | ||
( .... ) after a while and many msgs | ||
build program: kernel 'axpbyz' was part of a lengthy source build resulting from a binary cache miss (0.51 s) | ||
build program: kernel 'axpbyz' was part of a lengthy source build resulting from a binary cache miss (0.51 s) | ||
build program: kernel 'if_positive' was part of a lengthy source build resulting from a binary cache miss (0.55 s) | ||
build program: kernel 'axpbyz' was part of a lengthy source build resulting from a binary cache miss (0.51 s) | ||
build program: kernel 'axpbyz' was part of a lengthy source build resulting from a binary cache miss (0.52 s) | ||
build program: kernel 'if_positive' was part of a lengthy source build resulting from a binary cache miss (0.51 s) | ||
build program: kernel 'if_positive' was part of a lengthy source build resulting from a binary cache miss (0.51 s) | ||
build program: kernel 'if_positive' was part of a lengthy source build resulting from a binary cache miss (0.51 s) | ||
build program: kernel 'if_positive' was part of a lengthy source build resulting from a binary cache miss (0.50 s) | ||
build program: kernel 'reduce_kernel_stage1' was part of a lengthy source build resulting from a binary cache miss (0.60 s) | ||
build program: kernel 'reduce_kernel_stage1' was part of a lengthy source build resulting from a binary cache miss (0.63 s) | ||
build program: kernel 'reduce_kernel_stage1' was part of a lengthy source build resulting from a binary cache miss (0.64 s) | ||
build program: kernel 'reduce_kernel_stage1' was part of a lengthy source build resulting from a binary cache miss (0.65 s) | ||
build program: kernel 'reduce_kernel_stage1' was part of a lengthy source build resulting from a binary cache miss (0.68 s) | ||
build program: kernel 'reduce_kernel_stage1' was part of a lengthy source build resulting from a binary cache miss (0.69 s) | ||
build program: kernel 'reduce_kernel_stage1' was part of a lengthy source build resulting from a binary cache miss (0.73 s) | ||
build program: kernel 'reduce_kernel_stage1' was part of a lengthy source build resulting from a binary cache miss (0.78 s) | ||
build program: kernel 'reduce_kernel_stage2' was part of a lengthy source build resulting from a binary cache miss (0.60 s) | ||
build program: kernel 'reduce_kernel_stage2' was part of a lengthy source build resulting from a binary cache miss (0.59 s) | ||
build program: kernel 'reduce_kernel_stage2' was part of a lengthy source build resulting from a binary cache miss (0.64 s) | ||
build program: kernel 'reduce_kernel_stage2' was part of a lengthy source build resulting from a binary cache miss (0.64 s) | ||
build program: kernel 'reduce_kernel_stage2' was part of a lengthy source build resulting from a binary cache miss (0.64 s) | ||
build program: kernel 'reduce_kernel_stage2' was part of a lengthy source build resulting from a binary cache miss (0.64 s) | ||
build program: kernel 'reduce_kernel_stage2' was part of a lengthy source build resulting from a binary cache miss (0.64 s) | ||
build program: kernel 'reduce_kernel_stage2' was part of a lengthy source build resulting from a binary cache miss (0.64 s) | ||
[lassen30:57601] *** Process received signal *** | ||
[lassen30:57601] Signal: Segmentation fault (11) | ||
[lassen30:57601] Signal code: Address not mapped (1) | ||
[lassen30:57601] Failing at address: 0x10419d260 | ||
<< Rank 6: Generating lwcore_cpu.3434071_2.6 on lassen30 Wed Apr 6 10:19:55 PDT 2022 (LLNL_COREDUMP_FORMAT_CPU=lwcore) >> | ||
<< Rank 6: Generated lwcore_cpu.3434071_2.6 on lassen30 Wed Apr 6 10:19:58 PDT 2022 in 3 secs >> | ||
<< Rank 6: Waiting 60 secs before aborting task on lassen30 Wed Apr 6 10:19:58 PDT 2022 (LLNL_COREDUMP_WAIT_FOR_OTHERS=60) >> | ||
|
||
Traceback (most recent call last): | ||
File "/p/gpfs1/mtcampbe/CEESD/AutomatedTesting/MIRGE-Timing/timing/emirge.fusion/miniforge3/envs/timing.fusion/lib/python3.9/runpy.py", line 197, in _run_module_as_main | ||
File "/p/gpfs1/mtcampbe/CEESD/AutomatedTesting/MIRGE-Timing/timing/emirge.fusion/miniforge3/envs/timing.fusion/lib/python3.9/runpy.py", line 197, in _run_module_as_main | ||
return _run_code(code, main_globals, None, | ||
File "/p/gpfs1/mtcampbe/CEESD/AutomatedTesting/MIRGE-Timing/timing/emirge.fusion/miniforge3/envs/timing.fusion/lib/python3.9/runpy.py", line 87, in _run_code | ||
return _run_code(code, main_globals, None, | ||
File "/p/gpfs1/mtcampbe/CEESD/AutomatedTesting/MIRGE-Timing/timing/emirge.fusion/miniforge3/envs/timing.fusion/lib/python3.9/runpy.py", line 87, in _run_code | ||
exec(code, run_globals) | ||
File "/p/gpfs1/mtcampbe/CEESD/AutomatedTesting/MIRGE-Timing/timing/emirge.fusion/miniforge3/envs/timing.fusion/lib/python3.9/site-packages/mpi4py/__main__.py", line 7, in <module> | ||
exec(code, run_globals) | ||
File "/p/gpfs1/mtcampbe/CEESD/AutomatedTesting/MIRGE-Timing/timing/emirge.fusion/miniforge3/envs/timing.fusion/lib/python3.9/site-packages/mpi4py/__main__.py", line 7, in <module> | ||
main() | ||
File "/p/gpfs1/mtcampbe/CEESD/AutomatedTesting/MIRGE-Timing/timing/emirge.fusion/miniforge3/envs/timing.fusion/lib/python3.9/site-packages/mpi4py/run.py", line 198, in main | ||
main() | ||
File "/p/gpfs1/mtcampbe/CEESD/AutomatedTesting/MIRGE-Timing/timing/emirge.fusion/miniforge3/envs/timing.fusion/lib/python3.9/site-packages/mpi4py/run.py", line 198, in main | ||
run_command_line(args) | ||
File "/p/gpfs1/mtcampbe/CEESD/AutomatedTesting/MIRGE-Timing/timing/emirge.fusion/miniforge3/envs/timing.fusion/lib/python3.9/site-packages/mpi4py/run.py", line 47, in run_command_line | ||
run_command_line(args) | ||
File "/p/gpfs1/mtcampbe/CEESD/AutomatedTesting/MIRGE-Timing/timing/emirge.fusion/miniforge3/envs/timing.fusion/lib/python3.9/site-packages/mpi4py/run.py", line 47, in run_command_line | ||
run_path(sys.argv[0], run_name='__main__') | ||
File "/p/gpfs1/mtcampbe/CEESD/AutomatedTesting/MIRGE-Timing/timing/emirge.fusion/miniforge3/envs/timing.fusion/lib/python3.9/runpy.py", line 268, in run_path | ||
run_path(sys.argv[0], run_name='__main__') | ||
File "/p/gpfs1/mtcampbe/CEESD/AutomatedTesting/MIRGE-Timing/timing/emirge.fusion/miniforge3/envs/timing.fusion/lib/python3.9/runpy.py", line 268, in run_path | ||
return _run_module_code(code, init_globals, run_name, | ||
File "/p/gpfs1/mtcampbe/CEESD/AutomatedTesting/MIRGE-Timing/timing/emirge.fusion/miniforge3/envs/timing.fusion/lib/python3.9/runpy.py", line 97, in _run_module_code | ||
return _run_module_code(code, init_globals, run_name, | ||
File "/p/gpfs1/mtcampbe/CEESD/AutomatedTesting/MIRGE-Timing/timing/emirge.fusion/miniforge3/envs/timing.fusion/lib/python3.9/runpy.py", line 97, in _run_module_code | ||
_run_code(code, mod_globals, init_globals, | ||
File "/p/gpfs1/mtcampbe/CEESD/AutomatedTesting/MIRGE-Timing/timing/emirge.fusion/miniforge3/envs/timing.fusion/lib/python3.9/runpy.py", line 87, in _run_code | ||
_run_code(code, mod_globals, init_globals, | ||
File "/p/gpfs1/mtcampbe/CEESD/AutomatedTesting/MIRGE-Timing/timing/emirge.fusion/miniforge3/envs/timing.fusion/lib/python3.9/runpy.py", line 87, in _run_code | ||
exec(code, run_globals) | ||
File "./combozzle.py", line 1164, in <module> | ||
build program: kernel 'scalar_comparison_kernel' was part of a lengthy source build resulting from a binary cache miss (0.55 s) | ||
exec(code, run_globals) | ||
File "./combozzle.py", line 1164, in <module> | ||
main(use_logmgr=args.log, use_leap=args.leap, input_file=input_file, | ||
File "/p/gpfs1/mtcampbe/CEESD/AutomatedTesting/MIRGE-Timing/timing/emirge.fusion/mirgecom/mirgecom/mpi.py", line 157, in wrapped_func | ||
main(use_logmgr=args.log, use_leap=args.leap, input_file=input_file, | ||
File "/p/gpfs1/mtcampbe/CEESD/AutomatedTesting/MIRGE-Timing/timing/emirge.fusion/mirgecom/mirgecom/mpi.py", line 157, in wrapped_func | ||
func(*args, **kwargs) | ||
File "./combozzle.py", line 680, in main | ||
func(*args, **kwargs) | ||
File "./combozzle.py", line 680, in main | ||
cantera_soln = cantera.Solution(phase_id="gas", source=mech_cti) | ||
File "interfaces/cython/cantera/base.pyx", line 59, in cantera._cantera._SolutionBase.__cinit__ | ||
cantera_soln = cantera.Solution(phase_id="gas", source=mech_cti) | ||
File "interfaces/cython/cantera/base.pyx", line 59, in cantera._cantera._SolutionBase.__cinit__ | ||
File "interfaces/cython/cantera/base.pyx", line 160, in cantera._cantera._SolutionBase._init_cti_xml | ||
File "interfaces/cython/cantera/base.pyx", line 160, in cantera._cantera._SolutionBase._init_cti_xml | ||
cantera._cantera.CanteraError: | ||
*********************************************************************** | ||
CanteraError thrown by call_ctml_writer: | ||
Error executing python while converting input file: | ||
Python command was: '/p/gpfs1/mtcampbe/CEESD/AutomatedTesting/MIRGE-Timing/timing/emirge.fusion/miniforge3/envs/timing.fusion/bin/python' | ||
exec_stream_t::start: timeout while waiting for child to report via status_pipe | ||
Success | ||
[code 0x0000 ()] | ||
*********************************************************************** | ||
|
||
cantera._cantera.CanteraError: | ||
*********************************************************************** | ||
CanteraError thrown by call_ctml_writer: | ||
Error executing python while converting input file: | ||
Python command was: '/p/gpfs1/mtcampbe/CEESD/AutomatedTesting/MIRGE-Timing/timing/emirge.fusion/miniforge3/envs/timing.fusion/bin/python' | ||
exec_stream_t::start: timeout while waiting for child to report via status_pipe | ||
Success | ||
[code 0x0000 ()] | ||
*********************************************************************** | ||
|
||
Reading user input from file: run_config.yaml | ||
rank=7,dim=3,order=3,local_nelements=49152,global_nelements=393216 | ||
rank=7,local_nelements=49152,global_nelements=393216 | ||
Reading user input from file: run_config.yaml | ||
rank=6,dim=3,order=3,local_nelements=49152,global_nelements=393216 | ||
rank=6,local_nelements=49152,global_nelements=393216 | ||
-------------------------------------------------------------------------- | ||
MPI_ABORT was invoked on rank 7 in communicator MPI_COMM_WORLD | ||
with errorcode 1. |
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../scripts/mirge_batch_env.sh |
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run_config/weak_8.yaml |
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order: 3 | ||
domain_xlen: 1. | ||
domain_ylen: 1. | ||
domain_zlen: 1. | ||
chlen: .25 | ||
x_scale: 2 | ||
y_scale: 1 | ||
z_scale: 1 | ||
weak_scale: 4 | ||
h_scale: 1 | ||
boundary_report: 0 | ||
nspecies: 0 | ||
init_only: 0 | ||
grid_only: 0 | ||
discr_only: 0 | ||
inviscid_only: 0 | ||
inert_only: 0 | ||
single_gas_only: 0 | ||
dummy_rhs_only: 0 | ||
adiabatic_boundary: 0 | ||
periodic_boundary: 1 | ||
do_checkpoint: 0 | ||
nviz: 1000 | ||
nrestart: 10000 | ||
nstatus: 10000 | ||
sponge_on: 1 | ||
artificial_viscosity_on: 1 | ||
timestepping_on: 1 | ||
log_dependent: 0 | ||
current_dt: 1e-10 | ||
t_final: 2e-9 | ||
constant_cfl: 0 | ||
cfl: .1 | ||
integrator: euler | ||
init_pressure: 101325 | ||
init_temperature: 1500 | ||
init_density: 1.0 | ||
health_pres_min: 1 | ||
health_pres_max: 1000000 | ||
casename: combustle |
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order: 3 | ||
domain_xlen: 1. | ||
domain_ylen: 1. | ||
domain_zlen: 1. | ||
chlen: .25 | ||
x_scale: 2 | ||
y_scale: 2 | ||
z_scale: 1 | ||
weak_scale: 8 | ||
h_scale: 1 | ||
boundary_report: 0 | ||
nspecies: 0 | ||
init_only: 0 | ||
grid_only: 0 | ||
discr_only: 0 | ||
inviscid_only: 0 | ||
inert_only: 0 | ||
single_gas_only: 0 | ||
dummy_rhs_only: 0 | ||
adiabatic_boundary: 0 | ||
periodic_boundary: 1 | ||
do_checkpoint: 0 | ||
nviz: 1000 | ||
nrestart: 10000 | ||
nstatus: 10000 | ||
sponge_on: 1 | ||
artificial_viscosity_on: 1 | ||
timestepping_on: 1 | ||
log_dependent: 0 | ||
current_dt: 1e-10 | ||
t_final: 2e-9 | ||
constant_cfl: 0 | ||
cfl: .1 | ||
integrator: euler | ||
init_pressure: 101325 | ||
init_temperature: 1500 | ||
init_density: 1.0 | ||
health_pres_min: 1 | ||
health_pres_max: 1000000 | ||
casename: combustle |
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order: 3 | ||
domain_xlen: 1. | ||
domain_ylen: 1. | ||
domain_zlen: 1. | ||
chlen: .25 | ||
x_scale: 2 | ||
y_scale: 2 | ||
z_scale: 1 | ||
weak_scale: 4 | ||
h_scale: 1 | ||
boundary_report: 0 | ||
nspecies: 0 | ||
init_only: 0 | ||
grid_only: 0 | ||
discr_only: 0 | ||
inviscid_only: 0 | ||
inert_only: 0 | ||
single_gas_only: 0 | ||
dummy_rhs_only: 0 | ||
adiabatic_boundary: 0 | ||
periodic_boundary: 1 | ||
do_checkpoint: 0 | ||
nviz: 1000 | ||
nrestart: 10000 | ||
nstatus: 10000 | ||
sponge_on: 1 | ||
artificial_viscosity_on: 1 | ||
timestepping_on: 1 | ||
log_dependent: 0 | ||
current_dt: 1e-10 | ||
t_final: 2e-9 | ||
constant_cfl: 0 | ||
cfl: .1 | ||
integrator: euler | ||
init_pressure: 101325 | ||
init_temperature: 1500 | ||
init_density: 1.0 | ||
health_pres_min: 1 | ||
health_pres_max: 1000000 | ||
casename: combustle |
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order: 3 | ||
domain_xlen: 1. | ||
domain_ylen: 1. | ||
domain_zlen: 1. | ||
chlen: .25 | ||
x_scale: 1 | ||
y_scale: 1 | ||
z_scale: 1 | ||
weak_scale: 8 | ||
h_scale: 1 | ||
boundary_report: 0 | ||
nspecies: 0 | ||
init_only: 0 | ||
grid_only: 0 | ||
discr_only: 0 | ||
inviscid_only: 0 | ||
inert_only: 0 | ||
single_gas_only: 0 | ||
dummy_rhs_only: 0 | ||
adiabatic_boundary: 0 | ||
periodic_boundary: 1 | ||
do_checkpoint: 0 | ||
nviz: 1000 | ||
nrestart: 10000 | ||
nstatus: 10000 | ||
sponge_on: 1 | ||
artificial_viscosity_on: 1 | ||
timestepping_on: 1 | ||
log_dependent: 0 | ||
current_dt: 1e-10 | ||
t_final: 2e-9 | ||
constant_cfl: 0 | ||
cfl: .1 | ||
integrator: euler | ||
init_pressure: 101325 | ||
init_temperature: 1500 | ||
init_density: 1.0 | ||
health_pres_min: 1 | ||
health_pres_max: 1000000 | ||
casename: combustle |
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order: 3 | ||
domain_xlen: 1. | ||
domain_ylen: 1. | ||
domain_zlen: 1. | ||
chlen: .25 | ||
x_scale: 2 | ||
y_scale: 1 | ||
z_scale: 1 | ||
weak_scale: 8 | ||
h_scale: 1 | ||
boundary_report: 0 | ||
nspecies: 0 | ||
init_only: 0 | ||
grid_only: 0 | ||
discr_only: 0 | ||
inviscid_only: 0 | ||
inert_only: 0 | ||
single_gas_only: 0 | ||
dummy_rhs_only: 0 | ||
adiabatic_boundary: 0 | ||
periodic_boundary: 1 | ||
do_checkpoint: 0 | ||
nviz: 1000 | ||
nrestart: 10000 | ||
nstatus: 10000 | ||
sponge_on: 1 | ||
artificial_viscosity_on: 1 | ||
timestepping_on: 1 | ||
log_dependent: 0 | ||
current_dt: 1e-10 | ||
t_final: 2e-9 | ||
constant_cfl: 0 | ||
cfl: .1 | ||
integrator: euler | ||
init_pressure: 101325 | ||
init_temperature: 1500 | ||
init_density: 1.0 | ||
health_pres_min: 1 | ||
health_pres_max: 1000000 | ||
casename: combustle |
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../scripts/weak_scale_lazy_bsub.sh |
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Each directory here contains a test suite intended to run and capture | ||
grid-scaling experiemnts for _MIRGE-Com_. | ||
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In each experiment directory you should find the following: | ||
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||
- config: directory containing all the yaml file inputs for combozzle | ||
- run_logs: directory containing the data produced by actual runs | ||
- *bsub.sh*: a script containing the Lassen batch job used to create the data | ||
- combozzle.py: a symlink to the main combozzle python driver | ||
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In general, to run any given experiment on Lassen: | ||
(warning: this will overwrite any data in the `run_logs` directory.) | ||
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> bsub *bsub.sh | ||
Oops, something went wrong.