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Physical av #735

Merged
merged 519 commits into from
Apr 6, 2023
Merged

Physical av #735

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9e143ad
Get Traversable from correct import path.
MTCam Oct 31, 2022
197fc02
Test prod on porter
MTCam Nov 3, 2022
0a1ae3d
Correct issues with porter production runner.
Nov 3, 2022
95ba3c3
Remove any stale emirge directory in prod test.
MTCam Nov 3, 2022
d6d4b24
Remove stale remote if it exists.
MTCam Nov 3, 2022
3431267
Use git only to determine if remote exists.
Nov 3, 2022
4d267eb
Merge branch 'test-prediction-driver' into mengaldo-bcs
MTCam Nov 3, 2022
cc604d2
Remove nitpick exception
MTCam Nov 3, 2022
f5359ae
Merge branch 'mengaldo-bcs' into physical-av
MTCam Nov 3, 2022
888b0e5
Merge branch 'main' into mengaldo-bcs
MTCam Nov 3, 2022
172b748
Merge branch 'mengaldo-bcs' into physical-av
MTCam Nov 3, 2022
8bb5aea
Merge branch 'main' into mengaldo-bcs
MTCam Nov 7, 2022
3cdc76f
Merge branch 'mengaldo-bcs' into physical-av
MTCam Nov 7, 2022
30cc483
Author: Michael Campbell <[email protected]>
MTCam Nov 8, 2022
9a281f0
Sharpen comments for smoke test runner.
MTCam Nov 8, 2022
7391c24
Use driver@main after driver testing PR merge. Set caches in spawners.
MTCam Nov 8, 2022
52b8dcc
Merge branch 'main' into tulio/powerlaw_lewis
tulioricci Nov 9, 2022
4ab2a71
Merge branch 'main' into refactor-species-limiting
tulioricci Nov 9, 2022
b9bddcb
Switch arraycontext package to inducer/arraycontext
matthiasdiener Nov 11, 2022
a07217a
Update docs for new scripts.
MTCam Nov 11, 2022
4d7bfc2
Merge branch 'arraycontext-main' into mengaldo-bcs
MTCam Nov 12, 2022
450aa15
Merge branch 'mengaldo-bcs' into physical-av
MTCam Nov 12, 2022
c28abbe
Remove cache settings for porter.
MTCam Nov 12, 2022
6519c41
Test bad example.
MTCam Nov 12, 2022
f451c21
Merge branch 'main' into overhaul-testing-suite
MTCam Nov 12, 2022
1a01160
Undo error in example.
MTCam Nov 12, 2022
66b1973
Undo production customization
MTCam Nov 12, 2022
3e04b1a
Merge branch 'overhaul-testing-suite' into mengaldo-bcs
MTCam Nov 12, 2022
f9462e3
Merge branch 'mengaldo-bcs' into physical-av
MTCam Nov 12, 2022
7822e22
Fix driver path naming bug
MTCam Nov 12, 2022
59b9382
Merge branch 'overhaul-testing-suite' into mengaldo-bcs
MTCam Nov 12, 2022
29c72de
Merge branch 'mengaldo-bcs' into physical-av
MTCam Nov 12, 2022
980c604
Update scripts from main
MTCam Nov 14, 2022
b919ae0
Merge branch 'mengaldo-bcs' into physical-av
MTCam Nov 14, 2022
144b819
Merge branch 'main' into mengaldo-bcs
MTCam Nov 14, 2022
43ae724
Merge branch 'mengaldo-bcs' into physical-av
MTCam Nov 14, 2022
cf2e623
Merge branch 'main' into mengaldo-bcs
MTCam Nov 16, 2022
1f62d5e
Merge branch 'mengaldo-bcs' into physical-av
MTCam Nov 16, 2022
42e29a2
Merge branch 'main' into mengaldo-bcs
MTCam Nov 17, 2022
3429942
Merge branch 'mengaldo-bcs' into physical-av
MTCam Nov 17, 2022
58fc40c
Add Mengaldo BCs implementation
MTCam Nov 18, 2022
2dc8b95
Merge branch 'mengaldo-bcs' into physical-av
MTCam Nov 18, 2022
121097b
Remove unintended differences.
MTCam Nov 18, 2022
b3db3aa
Merge branch 'mengaldo-bcs' into physical-av
MTCam Nov 18, 2022
9fa1db8
Merge branch 'main' into mengaldo-bcs
MTCam Nov 18, 2022
e44cb15
Merge branch 'main' into physical-av
MTCam Nov 18, 2022
e7384c1
Merge branch 'main' into refactor-species-limiting
MTCam Nov 18, 2022
36ec7a5
Merge branch 'main' into mengaldo-bcs
MTCam Nov 18, 2022
56801e8
Merge branch 'mengaldo-bcs' into physical-av
MTCam Nov 18, 2022
11bda19
Merge branch 'main' into mengaldo-bcs
MTCam Nov 19, 2022
75463a4
Merge remote-tracking branch 'origin/mengaldo-bcs' into mengaldo-bcs
MTCam Nov 19, 2022
66b1963
Merge branch 'mengaldo-bcs' into physical-av
MTCam Nov 19, 2022
3de4964
Merge branch 'main' into mengaldo-bcs
MTCam Dec 2, 2022
b561f42
Fix up boundary treatments per Mengaldo
MTCam Dec 2, 2022
0dc853a
Merge branch 'mengaldo-bcs' into physical-av
MTCam Dec 2, 2022
6bc7f2a
fix?
MTCam Dec 2, 2022
f6037eb
Merge branch 'mengaldo-bcs' into physical-av
MTCam Dec 2, 2022
681d4df
Update boundary.py file
tulioricci Dec 7, 2022
d35d9dc
Update initializers.py file
tulioricci Dec 7, 2022
8f1d8b3
Update misc.rst and test_bc.py
tulioricci Dec 7, 2022
8068086
Update pulse-mpi.py
tulioricci Dec 7, 2022
e0a9d58
Fixes after checking the test and examples
tulioricci Dec 7, 2022
e28e2bc
Flake8 boundary.py
tulioricci Dec 7, 2022
f799598
Remove line that was making the test fail
tulioricci Dec 7, 2022
e64f929
Remove missing class from docs thingy
MTCam Dec 8, 2022
b1abff2
Add missing boundary class in module doc
MTCam Dec 8, 2022
8de14e2
Update mirgecom/initializers.py
tulioricci Dec 8, 2022
9f797f9
Flake8 initializers.py
tulioricci Dec 8, 2022
c4d6ff4
Bring the None check to __init__ in LinearOutBC
tulioricci Dec 8, 2022
0f4db95
Merge branch 'main' into refactor-species-limiting
tulioricci Dec 8, 2022
237f810
Merge branch 'main' into tulio/powerlaw_lewis
tulioricci Dec 8, 2022
c5fbda4
Add ortho axis util
MTCam Dec 9, 2022
db48760
Docstyle
MTCam Dec 9, 2022
f894b69
Add state option to initializers.py
tulioricci Dec 9, 2022
fea9b92
switch install.sh to Open MPI
matthiasdiener Dec 9, 2022
6485a8c
more details
matthiasdiener Dec 9, 2022
3be25cd
Merge branch 'ompi' into tulio/mengaldo-bcs
MTCam Dec 9, 2022
9792889
Merge branch 'main' into mengaldo-bcs
MTCam Dec 10, 2022
1b05ddc
Merge branch 'mengaldo-bcs' into tulio/mengaldo-bcs
MTCam Dec 10, 2022
1a8eca0
Merge branch 'tulio/mengaldo-bcs' into physical-av
MTCam Dec 10, 2022
199da35
Including 3D slip wall BC
tulioricci Dec 10, 2022
4747e94
Fixing flake8 in boundary.py
tulioricci Dec 10, 2022
63cbc32
Merge remote-tracking branch 'origin/tulio/mengaldo-bcs' into tulio/m…
MTCam Dec 12, 2022
962c6ed
Merge branch 'tulio/mengaldo-bcs' into physical-av
MTCam Dec 12, 2022
fccd2b3
Update outflow --> pressureoutflow
MTCam Dec 12, 2022
70ba748
put in adiabatic slip
anderson2981 Dec 12, 2022
f773f79
small changes to pass docs
anderson2981 Dec 12, 2022
47c981f
Add rot mat util, test
MTCam Dec 13, 2022
72a0487
Merge branch 'mengaldo-bcs' into physical-av
MTCam Dec 13, 2022
78324c9
Merge branch 'mengaldo-bcs' into mengaldo-adiabatic2
MTCam Dec 13, 2022
b9b1a17
Update calls to rotmat
MTCam Dec 13, 2022
5ff9455
Merge branch 'main' into mengaldo-bcs
MTCam Dec 13, 2022
427ae1b
Merge upstream
MTCam Dec 13, 2022
b215098
Merge branch 'mengaldo-bcs' into mengaldo-adiabatic2
MTCam Dec 13, 2022
51c9bfe
Add MikeAs fix to adiabatic slip.
MTCam Dec 13, 2022
991f578
Fix up axes getter call with new API
MTCam Dec 13, 2022
3432a20
Merge branch 'mengaldo-bcs' into physical-av
MTCam Dec 13, 2022
aff6b40
Update docs for new boundary routine.
MTCam Dec 13, 2022
1afe884
Merge branch 'mengaldo-bcs' into physical-av
MTCam Dec 13, 2022
03f0c19
Update boundary.py
anderson2981 Dec 13, 2022
0baefde
update adiabatic slip to specify a flux instead of using numerical fl…
anderson2981 Dec 13, 2022
7002f06
Merge upstream
MTCam Dec 13, 2022
cfe3327
Merge branch 'main' into refactor-species-limiting
tulioricci Dec 14, 2022
29d7c21
Add smoothness to see how production behaves
tulioricci Dec 14, 2022
d2d6111
Of course it wouldn't work
tulioricci Dec 14, 2022
d24a081
Merge branch 'refactor-species-limiting' into mengaldo-bcs-refac-lim
MTCam Dec 15, 2022
cbe610a
Merge mengaldo
MTCam Dec 15, 2022
c68f8bd
Use custom production branch
MTCam Dec 15, 2022
af783c9
Fix doc err
MTCam Dec 15, 2022
c073dbb
Add Tulios fix for creating smoothness field.
MTCam Dec 15, 2022
7e7fb64
Merge branch 'physical-av-refac-lim' into physical-av
MTCam Dec 15, 2022
61bb60a
Undo production env customization
MTCam Dec 15, 2022
0c8ce4b
Add fluid API test for limiting
MTCam Dec 16, 2022
3e3f563
Merge branch 'refactor-species-limiting' into mengaldo-bcs
MTCam Dec 16, 2022
973755e
Merge branch 'mengaldo-bcs' into physical-av
MTCam Dec 16, 2022
b710b2d
Clean up some lingering linting ish
MTCam Dec 16, 2022
0051bfb
Merge upstream
MTCam Dec 16, 2022
0cbc205
Merge branch 'mengaldo-bcs' into physical-av
MTCam Dec 16, 2022
d70ebd0
Merge branch 'main' into mengaldo-bcs
MTCam Dec 16, 2022
f9a0189
Merge branch 'mengaldo-bcs' into physical-av
MTCam Dec 16, 2022
e8e9db5
Merge branch 'main' into tulio/powerlaw_lewis
tulioricci Dec 16, 2022
0074c24
Dropping pre-computing viscosity because it is only useful for PowerL…
tulioricci Dec 16, 2022
446fc0f
Some minor tweaks
tulioricci Dec 16, 2022
1bebfa1
Merge branch 'main' into mengaldo-bcs
MTCam Jan 11, 2023
d59ed52
Merge branch 'mengaldo-bcs' into physical-av
MTCam Jan 11, 2023
822971a
Merge branch 'main' into mengaldo-bcs
MTCam Jan 11, 2023
b4b2f48
Merge branch 'mengaldo-bcs' into physical-av
MTCam Jan 11, 2023
7309e9a
Remove janky density-based indicator option.
MTCam Jan 17, 2023
4e71038
Merge branch 'main' into mengaldo-bcs
MTCam Jan 19, 2023
3c8318d
Merge branch 'mengaldo-bcs' into physical-av
MTCam Jan 19, 2023
aa4a848
disable mypy for imported packages without type stubs
matthiasdiener Jan 20, 2023
e4bc455
add CI job
matthiasdiener Jan 20, 2023
a6a84d1
fix mypy errors
matthiasdiener Jan 20, 2023
6c777c9
fix CI
matthiasdiener Jan 20, 2023
f4caf23
install
matthiasdiener Jan 20, 2023
c1ab839
fix ctypes
matthiasdiener Jan 21, 2023
12dfd17
install types
matthiasdiener Jan 21, 2023
09fb196
install explicitly
matthiasdiener Jan 21, 2023
afa846a
Merge branch 'mypy-ci' into mengaldo-mypy
MTCam Jan 21, 2023
2971b65
Merge branch 'mengaldo-mypy' into av-mypy
MTCam Jan 21, 2023
7742a3d
Merge branch 'main' into mengaldo-bcs
MTCam Jan 21, 2023
65ff1d6
Merge branch 'mengaldo-bcs' into physical-av
MTCam Jan 21, 2023
99d28ac
Use productions version of these files.
MTCam Jan 21, 2023
4584385
Merge branch 'main' into mengaldo-bcs
MTCam Jan 25, 2023
75e1337
Merge branch 'mengaldo-bcs' into physical-av
MTCam Jan 25, 2023
f760330
Merge branch 'main' into mengaldo-bcs
MTCam Feb 2, 2023
ab5c2a1
Merge branch 'mengaldo-bcs' into physical-av
MTCam Feb 2, 2023
df7d5c2
Merge remote-tracking branch 'origin/main' into mengaldo-bcs
majosm Feb 15, 2023
bc45a5f
Merge branch 'main' into mengaldo-bcs
MTCam Feb 17, 2023
0ebf10b
Merge branch 'mengaldo-bcs' into physical-av
MTCam Feb 17, 2023
aae08e7
Merge branch 'main' into mengaldo-bcs
MTCam Feb 23, 2023
6a97157
Merge branch 'main' into physical-av
MTCam Feb 23, 2023
8490baf
Merge branch 'mengaldo-bcs' into physical-av
MTCam Feb 23, 2023
c34dbc9
Merge branch 'main' into mengaldo-bcs
MTCam Feb 24, 2023
bcc4f62
Merge branch 'mengaldo-bcs' into physical-av
MTCam Feb 24, 2023
19c400c
Apply suggestions from code review
tulioricci Mar 2, 2023
d492bd0
Merge branch 'main' into tulio/powerlaw_lewis
tulioricci Mar 2, 2023
e4c6035
empty commit to trigger CI
matthiasdiener Mar 3, 2023
c532c2b
flake8 example
tulioricci Mar 4, 2023
b3aa2e6
Merge branch 'tulio/powerlaw_lewis' into mengaldo-bcs
MTCam Mar 4, 2023
6a1e9a5
Merge branch 'mengaldo-bcs' into physical-av
MTCam Mar 4, 2023
f7797c6
Push to kick CI.
MTCam Mar 4, 2023
eda7113
Merge branch 'main' into mengaldo-bcs
MTCam Mar 14, 2023
1262097
Merge branch 'mengaldo-bcs' into physical-av
MTCam Mar 14, 2023
003a463
Merge branch 'main' into tulio/powerlaw_lewis
MTCam Mar 14, 2023
780729d
Merge branch 'tulio/powerlaw_lewis' into mengaldo-bcs
MTCam Mar 14, 2023
fb76eea
Merge branch 'mengaldo-bcs' into physical-av
MTCam Mar 14, 2023
a126d78
Merge branch 'main' into tulio/powerlaw_lewis
tulioricci Mar 21, 2023
e8ae9ae
Merge branch 'tulio/powerlaw_lewis' into mengaldo-bcs
MTCam Mar 27, 2023
ac5ad11
Merge branch 'mengaldo-bcs' into physical-av
MTCam Mar 27, 2023
5b57e5c
Add option to turn off inviscid terms in CNS operator.
MTCam Mar 28, 2023
0f8f244
Deflake8
MTCam Mar 28, 2023
059b2d5
Merge branch 'MTCam-patch-1' into mengaldo-bcs
MTCam Mar 28, 2023
fec033d
partial update
MTCam Mar 29, 2023
6078f39
tweak mengaldo BC code
majosm Feb 9, 2023
984cc87
use grad_temperature_bc instead of grad_temperature_plus
majosm Feb 10, 2023
b50e3e8
changing smoothness to smoothness_mu, preparing for additional smooth…
anderson2981 Mar 29, 2023
37200d0
remove duplicated inviscid/viscous flux methods
majosm Feb 14, 2023
19182b6
first stab at adding beta and kappa smoothness
anderson2981 Mar 29, 2023
d54b811
make inviscid/viscous flux internal variables
majosm Feb 14, 2023
421d293
change grad_momentum_bc to grad_velocity_bc in _SlipBoundaryComponent…
majosm Feb 15, 2023
da01a9a
deprecate SymmetryBoundary
majosm Feb 20, 2023
907eb57
add comment about energy for inviscid
majosm Mar 28, 2023
5089059
only use _ldg_bnd_flux_for_grad in mengaldo BCs
majosm Mar 28, 2023
19caf7b
rename state_plus to state_plus_inviscid and explain why
majosm Mar 28, 2023
2a9fa73
don't pass callbacks to base class constructor unless they're expecte…
majosm Mar 29, 2023
b4ad363
add FIXME
majosm Mar 29, 2023
9a0978d
add some docstrings
majosm Mar 29, 2023
5c5610b
simplify cv_plus/cv_bc construction by using cv.replace
majosm Mar 29, 2023
ae009eb
add replace_fluid_state function and use it to further simplify state…
majosm Mar 29, 2023
0baabfb
tweak some docstrings
majosm Mar 29, 2023
b216521
add note
majosm Mar 29, 2023
989ae9e
updating transport class to use new smoothness
anderson2981 Mar 29, 2023
b28f086
restore SymmetryBoundary docstring to avoid unused reference error in…
majosm Mar 30, 2023
dc6be72
Reset CI
tulioricci Mar 30, 2023
f3cdcf3
Deawkwardize doc wording.
MTCam Mar 30, 2023
f145d13
updates to new transport class
anderson2981 Mar 31, 2023
44007ec
Merge branch 'MTCam-patch-1' into mengaldo-bcs
MTCam Mar 31, 2023
136ac81
Merge branch 'mengaldo-bcs' into physical-av
MTCam Mar 31, 2023
3c77142
Make clear that lewis must be an array
tulioricci Mar 31, 2023
e76b5dc
Merge remote-tracking branch 'origin/tulio/powerlaw_lewis' into tulio…
tulioricci Mar 31, 2023
94d8b78
Merge branch 'main' into tulio/powerlaw_lewis
MTCam Mar 31, 2023
caa5267
cleaning up and fixing examples
anderson2981 Mar 31, 2023
97b5220
Try to fix doc err.
MTCam Mar 31, 2023
8032134
Merge branch 'tulio/powerlaw_lewis' into mengaldo-bcs
MTCam Mar 31, 2023
7b16f15
Merge branch 'mengaldo-bcs' into physical-av
MTCam Mar 31, 2023
7eb10b2
Merge branch 'main' into mengaldo-bcs
MTCam Mar 31, 2023
9204a5c
Merge branch 'mengaldo-bcs' into physical-av
MTCam Mar 31, 2023
e31d7d0
Merge branch 'main' into update-mengaldo-bcs
MTCam Apr 1, 2023
c41a610
Partial update
MTCam Apr 1, 2023
1f2ad57
Refactor Mengaldo: Isothermal, and Adiabatic for clarity
MTCam Apr 1, 2023
7d17456
Update doublemach to provide its own boundary. This AV is deprecated…
MTCam Apr 1, 2023
9b73ac7
Matts changes update 1.
MTCam Apr 1, 2023
766ccf0
Add Matts replace fluid state helper
MTCam Apr 1, 2023
67cf345
Merge branch 'update-mengaldo-bcs' into physical-av-udmg
MTCam Apr 1, 2023
5e334bd
Use smoothness consistent
MTCam Apr 2, 2023
71d2fdd
Switch to mengaldo bcs
MTCam Apr 2, 2023
e626672
Update doc with boundary interface change.
MTCam Apr 2, 2023
4838e1c
Merge branch 'update-mengaldo-bcs' into physical-av-udmg
MTCam Apr 2, 2023
5f6bd22
Undo test changes
MTCam Apr 2, 2023
1a6a706
Merge branch 'update-mengaldo-bcs' into physical-av-udmg
MTCam Apr 2, 2023
438abbf
Merge Matts changes
MTCam Apr 2, 2023
0e1f076
Random cleanup
MTCam Apr 2, 2023
109340c
Remove duplicate func.
MTCam Apr 2, 2023
51466b8
Merge branch 'update-mengaldo-bcs' into physical-av-udmg
MTCam Apr 2, 2023
aae8b19
Merge branch 'update-mengaldo-bcs' into mengaldo-bcs
MTCam Apr 2, 2023
5408163
Merge branch 'mengaldo-bcs' into physical-av
MTCam Apr 2, 2023
bafd290
Update docs
MTCam Apr 2, 2023
ae4f744
Merge branch 'mengaldo-bcs' into physical-av
MTCam Apr 2, 2023
6baf924
Add another Poinsot ref, fix doc err?
MTCam Apr 2, 2023
8489bbe
Merge branch 'mengaldo-bcs' into physical-av
MTCam Apr 2, 2023
59574fe
Extricate AV-specific junk from fluid boundaries.
MTCam Apr 2, 2023
142c2fa
Extricate AV from fluid boundaries.
MTCam Apr 2, 2023
bd212df
Merge branch 'mengaldo-bcs' into physical-av
MTCam Apr 2, 2023
46850b4
Use production MANIFEST.in, try to fix gmsh ish with doublemach.
MTCam Apr 3, 2023
635b737
Update per final review comments
MTCam Apr 3, 2023
c20e75c
Merge branch 'mengaldo-bcs' into physical-av
MTCam Apr 3, 2023
6f2084c
Update outdated comment
MTCam Apr 3, 2023
dab9f3a
Merge branch 'mengaldo-bcs' into physical-av
MTCam Apr 3, 2023
1eabb0e
Remove old doc entry
MTCam Apr 3, 2023
4513d73
Update add smoothed transport (#861)
MTCam Apr 3, 2023
72dcbae
Merge branch 'mengaldo-bcs' into physical-av
MTCam Apr 3, 2023
708a0ea
Merge upstream changes.
MTCam Apr 3, 2023
5ce9a1d
Merge upstream changes
MTCam Apr 3, 2023
a08794b
Merge branch 'main' into pav-update
MTCam Apr 3, 2023
b2fd576
Merge branch 'physical-av' into add-smoothed-transport
MTCam Apr 3, 2023
ef663aa
Merge branch 'main' into physical-av
MTCam Apr 4, 2023
1425245
Use zeros_like, not 0*
MTCam Apr 5, 2023
e1ad33f
Zero smoothness
MTCam Apr 6, 2023
a61be82
Merge branch 'main' into physical-av
MTCam Apr 6, 2023
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2 changes: 2 additions & 0 deletions MANIFEST.in
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Original file line number Diff line number Diff line change
@@ -1,2 +1,4 @@
include mirgecom/mechanisms/*.yaml
include mirgecom/mechanisms/*.cti
include examples/*.geo
include examples/*.msh
1 change: 1 addition & 0 deletions examples/doublemach_physical_av-mpi-lazy.py
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Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
doublemach_physical_av-mpi.py
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