MICTI

insilicolife · Jun 20, 2019 · ba0e27f · ba0e27f
1 parent 822957d
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Showing 5 changed files with 5 additions and 5 deletions.
diff --git a/...eckpoints/MICTI tutorial-checkpoint.ipynb → ...eckpoints/MICTI_tutorial-checkpoint.ipynb b/...eckpoints/MICTI tutorial-checkpoint.ipynb → ...eckpoints/MICTI_tutorial-checkpoint.ipynb
diff --git a/MICTI tutorial.ipynb → docs/source/MICTI_tutorial.ipynb b/MICTI tutorial.ipynb → docs/source/MICTI_tutorial.ipynb
diff --git a/docs/source/installation.rst b/docs/source/installation.rst
@@ -31,4 +31,4 @@ Installation
 
    ::
 
-   $from MICTI import *
+   $from MICTI import MARKER
diff --git a/docs/source/tutorials.rst b/docs/source/tutorials.rst
@@ -108,8 +108,8 @@ Marker genes for each cluster
 
 
 +---------+-----------+--------------+--------------+
-| Genes	  | Z_scores  |	fdr	     |  p_value     |
-|	  |	      |              |              |
+| Genes	  | Z_scores  |	Adj P_value	 |  p_value     |
+|	      |	          |              |              |
 +=========+===========+==============+==============+
 |HLA-DRA  | 40.605319 | 0.000000e+00 |  0.000000e+00|
 +---------+-----------+--------------+--------------+

diff --git a/setup.py b/setup.py
@@ -5,15 +5,15 @@
 
 setuptools.setup(
     name="MICTI",
-    version="0.1.2",
+    version="0.1.3",
     author="Nigatu Ayele",
     author_email="[email protected]",
     description="Feature extraction approach in single-cell gene expression profiling for cell-type marker identification.",
     long_description=long_description,
     long_description_content_type="text/markdown",
     url="https://github.com/insilicolife/micti",
     packages=setuptools.find_packages(), 
-    install_requires=['numpy', 'pandas','scipy','scikit-learn', 'matplotlib', 'gprofiler', 'seaborn','pyensembl'],
+    install_requires=['numpy', 'pandas','scipy','scikit-learn', 'matplotlib','mpl_toolkits','pylab','gensim', 'gprofiler', 'seaborn','pyensembl', 'bs4','urllib','requests','json',"setuptools"],
     classifiers=(
         "Programming Language :: Python :: 3",
         "License :: OSI Approved :: MIT License",
Original file line number	Diff line number	Diff line change
Expand Up		@@ -31,4 +31,4 @@ Installation

		::

		$from MICTI import *
		$from MICTI import MARKER