pyani-plus is an application and Python module for whole-genome classification of microbes using Average Nucleotide Identity and similar methods. It is a reimplemented version of pyani with support for additional schedulers and methods.
A complete guide to citing pyani is included in the file CITATIONS. Please cite the following manuscript in your work, if you have found pyani useful:
Pritchard et al. (2016) "Genomics and taxonomy in diagnostics for food security: soft-rotting enterobacterial plant pathogens" Anal. Methods 8, 12-24 DOI: 10.1039/C5AY02550H
There are currently no stable releases of pyani-plus. If you would like to use the in-progress development version, please follow the usual installation procedure for GitHub repositories, e.g.
- Clone the repository:
git clone [email protected]:pyani-plus/pyani-plus.git - Change directory to the repository:
cd pyani-plus - Install using one of the following methods:
pip, e.g.:pip install -U -e .Make, e.g.:make install_macosormake install_linux
Please see the CONTRIBUTING.md file for more information
Unless otherwise indicated, the material in this project is made available under the MIT License.
(c) The University of Strathclyde 2024-present
Contact: [email protected]
Address:
Dr Leighton Pritchard,
Strathclyde Institute of Pharmacy and Biomedical Sciences
161 Cathedral Street
Glasgow
G4 0RE,
Scotland,
UK
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