Removed deprecated instruments. Added start/offset options.

clig/mpiprepsubband.1

@@ -11,7 +11,7 @@
 .\" it edited by clig, remove the respective pair of cligPart-lines.
 .\"
 .\" cligPart TITLE
-.TH "mpiprepsubband" 1 "03Jun17" "Clig-manuals" "Programmer's Manual"
+.TH "mpiprepsubband" 1 "28Jun17" "Clig-manuals" "Programmer's Manual"
 .\" cligPart TITLE end
 
 .\" cligPart NAME
@@ -23,10 +23,6 @@ mpiprepsubband \- Converts a raw radio data file into many de-dispersed time-ser
 .SH SYNOPSIS
 .B mpiprepsubband
 -o outfile
-[-pkmb]
-[-gmrt]
-[-bcpm]
-[-spigot]
 [-filterbank]
 [-psrfits]
 [-noweights]
@@ -43,6 +39,8 @@ mpiprepsubband \- Converts a raw radio data file into many de-dispersed time-ser
 [-runavg]
 [-numout numout]
 [-nobary]
+[-offset offset]
+[-start start]
 [-lodm lodm]
 [-dmstep dmstep]
 [-numdms numdms]
@@ -59,14 +57,6 @@ infile ...
 Root of the output file names,
 .br
 1 String value
-.IP -pkmb
-Raw data in Parkes Multibeam format.
-.IP -gmrt
-Raw data in GMRT Phased Array format.
-.IP -bcpm
-Raw data in Berkeley-Caltech Pulsar Machine (BPP) format.
-.IP -spigot
-Raw data in Caltech-NRAO Spigot Card format.
 .IP -filterbank
 Raw data in SIGPROC filterbank format.
 .IP -psrfits
@@ -111,6 +101,18 @@ Output this many values.  If there are not enough values in the original data fi
 1 Long value between 1 and oo.
 .IP -nobary
 Do not barycenter the data.
+.IP -offset
+Number of spectra to offset into as starting data point,
+.br
+1 Long value between 0 and oo.
+.br
+Default: `0'
+.IP -start
+Starting point of the processing as a fraction of the full obs,
+.br
+1 Double value between 0.0 and 1.0.
+.br
+Default: `0.0'
 .IP -lodm
 The lowest dispersion measure to de-disperse (cm^-3 pc),
 .br

clig/mpiprepsubband_cmd.cli

@@ -12,10 +12,6 @@ Commandline full_cmd_line
 
 String -o       outfile {Root of the output file names} \
 	-m
-Flag   -pkmb    pkmb    {Raw data in Parkes Multibeam format}
-Flag   -gmrt    gmrt    {Raw data in GMRT Phased Array format}
-Flag   -bcpm    bcpm    {Raw data in Berkeley-Caltech Pulsar Machine (BPP) format}
-Flag   -spigot  spigot  {Raw data in Caltech-NRAO Spigot Card format}
 Flag   -filterbank  filterbank  {Raw data in SIGPROC filterbank format}
 Flag   -psrfits     psrfits     {Raw data in PSRFITS format}
 Flag   -noweights  noweights  {Do not apply PSRFITS weights}
@@ -36,6 +32,10 @@ Flag   -runavg  runavg  {Running mean subtraction from the input data}
 Long    -numout  numout  {Output this many values.  If there are not enough values in the original data file, will pad the output file with the average value} \
 	-r 1 oo
 Flag   -nobary  nobary  {Do not barycenter the data}
+Long   -offset  offset {Number of spectra to offset into as starting data point} \
+    -r 0 oo -d 0
+Double -start  start  {Starting point of the processing as a fraction of the full obs} \
+    -r 0.0 1.0  -d 0.0
 Double  -lodm   lodm    {The lowest dispersion measure to de-disperse (cm^-3 pc)} \
 	-r 0 oo  -d 0
 Double  -dmstep dmstep  {The stepsize in dispersion measure to use(cm^-3 pc)} \

clig/prepdata.1

@@ -11,7 +11,7 @@
 .\" it edited by clig, remove the respective pair of cligPart-lines.
 .\"
 .\" cligPart TITLE
-.TH "prepdata" 1 "03Jun17" "Clig-manuals" "Programmer's Manual"
+.TH "prepdata" 1 "28Jun17" "Clig-manuals" "Programmer's Manual"
 .\" cligPart TITLE end
 
 .\" cligPart NAME
@@ -24,27 +24,23 @@ prepdata \- Prepares a raw data file for pulsar searching or folding (conversion
 .B prepdata
 [-ncpus ncpus]
 -o outfile
-[-pkmb]
-[-gmrt]
-[-bcpm]
-[-spigot]
 [-filterbank]
 [-psrfits]
 [-noweights]
 [-noscales]
 [-nooffsets]
-[-wapp]
 [-window]
-[-numwapps numwapps]
 [-if ifs]
 [-clip clip]
 [-noclip]
 [-invert]
 [-zerodm]
-[-numout numout]
-[-downsamp downsamp]
 [-nobary]
 [-shorts]
+[-numout numout]
+[-downsamp downsamp]
+[-offset offset]
+[-start start]
 [-dm dm]
 [-mask maskfile]
 [-ignorechan ignorechanstr]
@@ -63,14 +59,6 @@ Default: `1'
 Root of the output file names,
 .br
 1 String value
-.IP -pkmb
-Raw data in Parkes Multibeam format.
-.IP -gmrt
-Raw data in GMRT Phased Array format.
-.IP -bcpm
-Raw data in Berkeley-Caltech Pulsar Machine (BPP) format.
-.IP -spigot
-Raw data in Caltech-NRAO Spigot Card format.
 .IP -filterbank
 Raw data in SIGPROC filterbank format.
 .IP -psrfits
@@ -81,16 +69,8 @@ Do not apply PSRFITS weights.
 Do not apply PSRFITS scales.
 .IP -nooffsets
 Do not apply PSRFITS offsets.
-.IP -wapp
-Raw data in Wideband Arecibo Pulsar Processor (WAPP) format.
 .IP -window
 Window correlator lags with a Hamming window before FFTing.
-.IP -numwapps
-Number of WAPPs used with contiguous frequencies,
-.br
-1 Int value between 1 and 8.
-.br
-Default: `1'
 .IP -if
 A specific IF to use if available (summed IFs is the default),
 .br
@@ -107,6 +87,10 @@ Do not clip the data.  (The default is to _always_ clip!).
 For rawdata, flip (or invert) the band.
 .IP -zerodm
 Subtract the mean of all channels from each sample (i.e. remove zero DM).
+.IP -nobary
+Do not barycenter the data.
+.IP -shorts
+Use short ints for the output data instead of floats.
 .IP -numout
 Output this many values.  If there are not enough values in the original data file, will pad the output file with the average value,
 .br
@@ -117,10 +101,18 @@ The number of neighboring bins to co-add,
 1 Int value between 1 and 128.
 .br
 Default: `1'
-.IP -nobary
-Do not barycenter the data.
-.IP -shorts
-Use short ints for the output data instead of floats.
+.IP -offset
+Number of spectra to offset into as starting data point,
+.br
+1 Long value between 0 and oo.
+.br
+Default: `0'
+.IP -start
+Starting point of the processing as a fraction of the full obs,
+.br
+1 Double value between 0.0 and 1.0.
+.br
+Default: `0.0'
 .IP -dm
 The dispersion measure to de-disperse (cm^-3 pc),
 .br

clig/prepdata_cmd.cli

@@ -10,36 +10,33 @@ Commandline full_cmd_line
 
 # Options (in order you want them to appear)
 
-Int -ncpus   ncpus      {Number of processors to use with OpenMP} \
+Int -ncpus   ncpus  {Number of processors to use with OpenMP} \
 	-r 1 oo  -d 1
 String -o       outfile {Root of the output file names} \
 	-m
-Flag   -pkmb    pkmb    {Raw data in Parkes Multibeam format}
-Flag   -gmrt    gmrt    {Raw data in GMRT Phased Array format}
-Flag   -bcpm    bcpm    {Raw data in Berkeley-Caltech Pulsar Machine (BPP) format}
-Flag   -spigot  spigot  {Raw data in Caltech-NRAO Spigot Card format}
 Flag   -filterbank  filterbank  {Raw data in SIGPROC filterbank format}
 Flag   -psrfits     psrfits     {Raw data in PSRFITS format}
-Flag   -noweights  noweights  {Do not apply PSRFITS weights}
-Flag   -noscales   noscales   {Do not apply PSRFITS scales}
-Flag   -nooffsets  nooffsets  {Do not apply PSRFITS offsets}
-Flag   -wapp    wapp    {Raw data in Wideband Arecibo Pulsar Processor (WAPP) format}
+Flag   -noweights   noweights   {Do not apply PSRFITS weights}
+Flag   -noscales    noscales    {Do not apply PSRFITS scales}
+Flag   -nooffsets   nooffsets   {Do not apply PSRFITS offsets}
 Flag   -window  window  {Window correlator lags with a Hamming window before FFTing}
-Int    -numwapps numwapps  {Number of WAPPs used with contiguous frequencies} \
-	-r 1 8    -d 1
 Int    -if      ifs     {A specific IF to use if available (summed IFs is the default)} \
 	-r 0 1
 Float  -clip    clip    {Time-domain sigma to use for clipping (0.0 = no clipping, 6.0 = default} \
 	-r 0 1000.0  -d 6.0
 Flag   -noclip  noclip  {Do not clip the data.  (The default is to _always_ clip!)}
 Flag   -invert  invert  {For rawdata, flip (or invert) the band}
 Flag   -zerodm  zerodm  {Subtract the mean of all channels from each sample (i.e. remove zero DM)}
-Long    -numout  numout  {Output this many values.  If there are not enough values in the original data file, will pad the output file with the average value} \
-	-r 1 oo
-Int    -downsamp downsamp {The number of neighboring bins to co-add} \
-       -r 1 128 -d 1
 Flag   -nobary  nobary  {Do not barycenter the data}
 Flag   -shorts  shorts  {Use short ints for the output data instead of floats}
+Long   -numout  numout  {Output this many values.  If there are not enough values in the original data file, will pad the output file with the average value} \
+	-r 1 oo
+Int    -downsamp downsamp {The number of neighboring bins to co-add} \
+    -r 1 128 -d 1
+Long   -offset  offset {Number of spectra to offset into as starting data point} \
+    -r 0 oo -d 0
+Double -start  start  {Starting point of the processing as a fraction of the full obs} \
+    -r 0.0 1.0  -d 0.0
 Double  -dm      dm      {The dispersion measure to de-disperse (cm^-3 pc)} \
 	-r 0 oo  -d 0
 String -mask    maskfile {File containing masking information to use}

clig/prepfold.1

@@ -11,7 +11,7 @@
 .\" it edited by clig, remove the respective pair of cligPart-lines.
 .\"
 .\" cligPart TITLE
-.TH "prepfold" 1 "03Jun17" "Clig-manuals" "Programmer's Manual"
+.TH "prepfold" 1 "28Jun17" "Clig-manuals" "Programmer's Manual"
 .\" cligPart TITLE end
 
 .\" cligPart NAME
@@ -24,10 +24,6 @@ prepfold \- Prepares (if required) and folds raw radio data, standard time serie
 .B prepfold
 [-ncpus ncpus]
 [-o outfile]
-[-pkmb]
-[-gmrt]
-[-bcpm]
-[-spigot]
 [-filterbank]
 [-psrfits]
 [-noweights]
@@ -116,14 +112,6 @@ Default: `1'
 Root of the output file names,
 .br
 1 String value
-.IP -pkmb
-Raw data in Parkes Multibeam format.
-.IP -gmrt
-Raw data in GMRT Phased Array format.
-.IP -bcpm
-Raw data in Berkeley-Caltech Pulsar Machine (BPP) format.
-.IP -spigot
-Raw data in Caltech-NRAO Spigot Card format.
 .IP -filterbank
 Raw data in SIGPROC filterbank format.
 .IP -psrfits

clig/prepfold_cmd.cli

@@ -13,10 +13,6 @@ Commandline full_cmd_line
 Int -ncpus   ncpus      {Number of processors to use with OpenMP} \
 	-r 1 oo  -d 1
 String -o       outfile {Root of the output file names}
-Flag   -pkmb    pkmb    {Raw data in Parkes Multibeam format}
-Flag   -gmrt    gmrt    {Raw data in GMRT Phased Array format}
-Flag   -bcpm    bcpm    {Raw data in Berkeley-Caltech Pulsar Machine (BPP) format}
-Flag   -spigot  spigot  {Raw data in Caltech-NRAO Spigot Card format}
 Flag   -filterbank  filterbank  {Raw data in SIGPROC filterbank format}
 Flag   -psrfits     psrfits     {Raw data in PSRFITS format}
 Flag   -noweights  noweights  {Do not apply PSRFITS weights}

clig/prepsubband.1

@@ -11,7 +11,7 @@
 .\" it edited by clig, remove the respective pair of cligPart-lines.
 .\"
 .\" cligPart TITLE
-.TH "prepsubband" 1 "03Jun17" "Clig-manuals" "Programmer's Manual"
+.TH "prepsubband" 1 "28Jun17" "Clig-manuals" "Programmer's Manual"
 .\" cligPart TITLE end
 
 .\" cligPart NAME
@@ -24,10 +24,6 @@ prepsubband \- Converts a raw radio data file into many de-dispersed time-series
 .B prepsubband
 [-ncpus ncpus]
 -o outfile
-[-pkmb]
-[-gmrt]
-[-bcpm]
-[-spigot]
 [-filterbank]
 [-psrfits]
 [-noweights]
@@ -46,6 +42,8 @@ prepsubband \- Converts a raw radio data file into many de-dispersed time-series
 [-subdm subdm]
 [-numout numout]
 [-nobary]
+[-offset offset]
+[-start start]
 [-lodm lodm]
 [-dmstep dmstep]
 [-numdms numdms]
@@ -69,14 +67,6 @@ Default: `1'
 Root of the output file names,
 .br
 1 String value
-.IP -pkmb
-Raw data in Parkes Multibeam format.
-.IP -gmrt
-Raw data in GMRT Phased Array format.
-.IP -bcpm
-Raw data in Berkeley-Caltech Pulsar Machine (BPP) format.
-.IP -spigot
-Raw data in Caltech-NRAO Spigot Card format.
 .IP -filterbank
 Raw data in SIGPROC filterbank format.
 .IP -psrfits
@@ -129,6 +119,18 @@ Output this many values.  If there are not enough values in the original data fi
 1 Long value between 1 and oo.
 .IP -nobary
 Do not barycenter the data.
+.IP -offset
+Number of spectra to offset into as starting data point,
+.br
+1 Long value between 0 and oo.
+.br
+Default: `0'
+.IP -start
+Starting point of the processing as a fraction of the full obs,
+.br
+1 Double value between 0.0 and 1.0.
+.br
+Default: `0.0'
 .IP -lodm
 The lowest dispersion measure to de-disperse (cm^-3 pc),
 .br

clig/prepsubband_cmd.cli

@@ -14,10 +14,6 @@ Int -ncpus   ncpus      {Number of processors to use with OpenMP} \
 	-r 1 oo  -d 1
 String -o       outfile {Root of the output file names} \
 	-m
-Flag   -pkmb    pkmb    {Raw data in Parkes Multibeam format}
-Flag   -gmrt    gmrt    {Raw data in GMRT Phased Array format}
-Flag   -bcpm    bcpm    {Raw data in Berkeley-Caltech Pulsar Machine (BPP) format}
-Flag   -spigot  spigot  {Raw data in Caltech-NRAO Spigot Card format}
 Flag   -filterbank  filterbank  {Raw data in SIGPROC filterbank format}
 Flag   -psrfits     psrfits     {Raw data in PSRFITS format}
 Flag   -noweights  noweights  {Do not apply PSRFITS weights}
@@ -41,6 +37,10 @@ Double -subdm   subdm   {The DM to use when de-dispersing subbands for -sub} \
 Long    -numout  numout  {Output this many values.  If there are not enough values in the original data file, will pad the output file with the average value} \
 	-r 1 oo
 Flag   -nobary  nobary  {Do not barycenter the data}
+Long   -offset  offset {Number of spectra to offset into as starting data point} \
+    -r 0 oo -d 0
+Double -start  start  {Starting point of the processing as a fraction of the full obs} \
+    -r 0.0 1.0  -d 0.0
 Double  -lodm   lodm    {The lowest dispersion measure to de-disperse (cm^-3 pc)} \
 	-r 0 oo  -d 0
 Double  -dmstep dmstep  {The stepsize in dispersion measure to use(cm^-3 pc)} \