Deployed 7d7bdfe with MkDocs version: 1.6.1

EntityTypeEnum/index.html

@@ -990,7 +990,7 @@ <h2 id="permissible-values">Permissible Values</h2>
 <tr>
 <td>rdfs literal</td>
 <td>rdfs:Literal</td>
-<td>This value indicate that the entity being mapped is not a semantic entity wit...</td>
+<td>This value indicates that the entity being mapped is not a semantic entity wi...</td>
 </tr>
 <tr>
 <td>rdfs datatype</td>
@@ -1002,6 +1002,11 @@ <h2 id="permissible-values">Permissible Values</h2>
 <td>rdf:Property</td>
 <td></td>
 </tr>
+<tr>
+<td>composed entity expression</td>
+<td>None</td>
+<td>This value indicates that the entity ID does not represent a single entity, b...</td>
+</tr>
 </tbody>
 </table>
 <h2 id="slots">Slots</h2>
@@ -1065,7 +1070,7 @@ <h2 id="linkml-source">LinkML Source</h2>
     meaning: rdfs:Class
   rdfs literal:
     text: rdfs literal
-    description: This value indicate that the entity being mapped is not a semantic
+    description: This value indicates that the entity being mapped is not a semantic
       entity with a distinct identifier, but is instead represented entirely by its
       literal label. This value MUST NOT be used in the predicate_type slot.
     meaning: rdfs:Literal
@@ -1079,6 +1084,16 @@ <h2 id="linkml-source">LinkML Source</h2>
   rdf property:
     text: rdf property
     meaning: rdf:Property
+  composed entity expression:
+    text: composed entity expression
+    description: This value indicates that the entity ID does not represent a single
+      entity, but a composite involving several individual entities. This value MUST
+      NOT be used in the predicate_type slot. This specifications does not prescribe
+      how an ID representing a composite entity should be interpreted; this is left
+      at the discretion of applications.
+    see_also:
+    - https://github.com/mapping-commons/sssom/issues/402
+    - https://github.com/mapping-commons/sssom/blob/master/examples/schema/composite-entities.sssom.tsv
 
 </code></pre>
 

comment/index.html

@@ -917,7 +917,7 @@
 
 <h1 id="comment">comment</h1>
 <p><strong>URI</strong>: <a href="http://www.w3.org/2000/01/rdf-schema#comment">rdfs:comment</a></p>
-<p><strong>Applicable to</strong>: <a href="../Mapping/">Mapping</a>, <a href="../MappingSet/">MappingSet</a></p>
+<p><strong>Applicable to</strong>: <a href="../MappingSet/">MappingSet</a>, <a href="../Mapping/">Mapping</a></p>
 <div class="admonition info">
 <p class="admonition-title">Description</p>
 <p><em>Free text field containing either curator notes or text generated by tool providing additional informative information.</em></p>

creator_id/index.html

@@ -917,7 +917,7 @@
 
 <h1 id="creator_id">creator_id</h1>
 <p><strong>URI</strong>: <a href="http://purl.org/dc/terms/creator">dcterms:creator</a></p>
-<p><strong>Applicable to</strong>: <a href="../Mapping/">Mapping</a>, <a href="../MappingSet/">MappingSet</a></p>
+<p><strong>Applicable to</strong>: <a href="../MappingSet/">MappingSet</a>, <a href="../Mapping/">Mapping</a></p>
 <div class="admonition info">
 <p class="admonition-title">Description</p>
 <p><em>Identifies the persons or groups responsible for the creation of the mapping. The creator is the agent that put the mapping in its published form, which may be different from the author, which is a person that was actively involved in the assertion of the mapping. Recommended to be a list of ORCIDs or otherwise identifying URIs.</em></p>

creator_label/index.html

@@ -917,7 +917,7 @@
 
 <h1 id="creator_label">creator_label</h1>
 <p><strong>URI</strong>: <a href="https://w3id.org/sssom/creator_label">sssom:creator_label</a></p>
-<p><strong>Applicable to</strong>: <a href="../Mapping/">Mapping</a>, <a href="../MappingSet/">MappingSet</a></p>
+<p><strong>Applicable to</strong>: <a href="../MappingSet/">MappingSet</a>, <a href="../Mapping/">Mapping</a></p>
 <div class="admonition info">
 <p class="admonition-title">Description</p>
 <p><em>A string identifying the creator of this mapping. In the spirit of provenance, consider using creator_id instead.</em></p>

index.html

@@ -1335,7 +1335,7 @@ <h3 id="quick-reference-for-mapping-metadata">Quick reference for mapping metada
 <tr>
 <td><strong><a href="subject_type/">subject_type</a></strong></td>
 <td>The type of entity that is being mapped.</td>
-<td>owl class, owl object property, owl data property, owl annotation property, owl named individual, skos concept, rdfs resource, rdfs class, rdfs literal, rdfs datatype, rdf property</td>
+<td>owl class, owl object property, owl data property, owl annotation property, owl named individual, skos concept, rdfs resource, rdfs class, rdfs literal, rdfs datatype, rdf property, composed entity expression</td>
 <td>owl:Class</td>
 <td>Optional</td>
 </tr>
@@ -1356,7 +1356,7 @@ <h3 id="quick-reference-for-mapping-metadata">Quick reference for mapping metada
 <tr>
 <td><strong><a href="object_type/">object_type</a></strong></td>
 <td>The type of entity that is being mapped.</td>
-<td>owl class, owl object property, owl data property, owl annotation property, owl named individual, skos concept, rdfs resource, rdfs class, rdfs literal, rdfs datatype, rdf property</td>
+<td>owl class, owl object property, owl data property, owl annotation property, owl named individual, skos concept, rdfs resource, rdfs class, rdfs literal, rdfs datatype, rdf property, composed entity expression</td>
 <td>owl:Class</td>
 <td>Optional</td>
 </tr>

license/index.html

@@ -917,7 +917,7 @@
 
 <h1 id="license">license</h1>
 <p><strong>URI</strong>: <a href="http://purl.org/dc/terms/license">dcterms:license</a></p>
-<p><strong>Applicable to</strong>: <a href="../Mapping/">Mapping</a>, <a href="../MappingSet/">MappingSet</a></p>
+<p><strong>Applicable to</strong>: <a href="../MappingSet/">MappingSet</a>, <a href="../Mapping/">Mapping</a></p>
 <div class="admonition info">
 <p class="admonition-title">Description</p>
 <p><em>A url to the license of the mapping. In absence of a license we assume no license.</em></p>

mapping_date/index.html

@@ -917,7 +917,7 @@
 
 <h1 id="mapping_date">mapping_date</h1>
 <p><strong>URI</strong>: <a href="http://purl.org/pav/authoredOn">pav:authoredOn</a></p>
-<p><strong>Applicable to</strong>: <a href="../Mapping/">Mapping</a>, <a href="../MappingSet/">MappingSet</a></p>
+<p><strong>Applicable to</strong>: <a href="../MappingSet/">MappingSet</a>, <a href="../Mapping/">Mapping</a></p>
 <div class="admonition info">
 <p class="admonition-title">Description</p>
 <p><em>The date the mapping was asserted. This is different from the date the mapping was published or compiled in a SSSOM file.</em></p>

mapping_provider/index.html

@@ -917,7 +917,7 @@
 
 <h1 id="mapping_provider">mapping_provider</h1>
 <p><strong>URI</strong>: <a href="https://w3id.org/sssom/mapping_provider">sssom:mapping_provider</a></p>
-<p><strong>Applicable to</strong>: <a href="../Mapping/">Mapping</a>, <a href="../MappingSet/">MappingSet</a></p>
+<p><strong>Applicable to</strong>: <a href="../MappingSet/">MappingSet</a>, <a href="../Mapping/">Mapping</a></p>
 <div class="admonition info">
 <p class="admonition-title">Description</p>
 <p><em>URL pointing to the source that provided the mapping, for example an ontology that already contains the mappings, or a database from which it was derived.</em></p>

mapping_tool/index.html

@@ -917,7 +917,7 @@
 
 <h1 id="mapping_tool">mapping_tool</h1>
 <p><strong>URI</strong>: <a href="https://w3id.org/sssom/mapping_tool">sssom:mapping_tool</a></p>
-<p><strong>Applicable to</strong>: <a href="../Mapping/">Mapping</a>, <a href="../MappingSet/">MappingSet</a></p>
+<p><strong>Applicable to</strong>: <a href="../MappingSet/">MappingSet</a>, <a href="../Mapping/">Mapping</a></p>
 <div class="admonition info">
 <p class="admonition-title">Description</p>
 <p><em>A reference to the tool or algorithm that was used to generate the mapping. Should be a URL pointing to more info about it, but can be free text.</em></p>

mapping_tool_version/index.html

@@ -917,7 +917,7 @@
 
 <h1 id="mapping_tool_version">mapping_tool_version</h1>
 <p><strong>URI</strong>: <a href="https://w3id.org/sssom/mapping_tool_version">sssom:mapping_tool_version</a></p>
-<p><strong>Applicable to</strong>: <a href="../Mapping/">Mapping</a>, <a href="../MappingSet/">MappingSet</a></p>
+<p><strong>Applicable to</strong>: <a href="../MappingSet/">MappingSet</a>, <a href="../Mapping/">Mapping</a></p>
 <div class="admonition info">
 <p class="admonition-title">Description</p>
 <p><em>Version string that denotes the version of the mapping tool used.</em></p>

object_match_field/index.html

@@ -917,7 +917,7 @@
 
 <h1 id="object_match_field">object_match_field</h1>
 <p><strong>URI</strong>: <a href="https://w3id.org/sssom/object_match_field">sssom:object_match_field</a></p>
-<p><strong>Applicable to</strong>: <a href="../Mapping/">Mapping</a>, <a href="../MappingSet/">MappingSet</a></p>
+<p><strong>Applicable to</strong>: <a href="../MappingSet/">MappingSet</a>, <a href="../Mapping/">Mapping</a></p>
 <div class="admonition info">
 <p class="admonition-title">Description</p>
 <p><em>A list of properties (term annotations on the object) that was used for the match.</em></p>

object_preprocessing/index.html

@@ -917,7 +917,7 @@
 
 <h1 id="object_preprocessing">object_preprocessing</h1>
 <p><strong>URI</strong>: <a href="https://w3id.org/sssom/object_preprocessing">sssom:object_preprocessing</a></p>
-<p><strong>Applicable to</strong>: <a href="../Mapping/">Mapping</a>, <a href="../MappingSet/">MappingSet</a></p>
+<p><strong>Applicable to</strong>: <a href="../MappingSet/">MappingSet</a>, <a href="../Mapping/">Mapping</a></p>
 <div class="admonition info">
 <p class="admonition-title">Description</p>
 <p><em>Method of preprocessing applied to the fields of the object. If different preprocessing steps were performed on different fields, it is recommended to store the match in separate rows.</em></p>

object_source/index.html

@@ -917,7 +917,7 @@
 
 <h1 id="object_source">object_source</h1>
 <p><strong>URI</strong>: <a href="https://w3id.org/sssom/object_source">sssom:object_source</a></p>
-<p><strong>Applicable to</strong>: <a href="../Mapping/">Mapping</a>, <a href="../MappingSet/">MappingSet</a></p>
+<p><strong>Applicable to</strong>: <a href="../MappingSet/">MappingSet</a>, <a href="../Mapping/">Mapping</a></p>
 <div class="admonition info">
 <p class="admonition-title">Description</p>
 <p><em>URI of vocabulary or identifier source for the object.</em></p>

object_source_version/index.html

@@ -917,7 +917,7 @@
 
 <h1 id="object_source_version">object_source_version</h1>
 <p><strong>URI</strong>: <a href="https://w3id.org/sssom/object_source_version">sssom:object_source_version</a></p>
-<p><strong>Applicable to</strong>: <a href="../Mapping/">Mapping</a>, <a href="../MappingSet/">MappingSet</a></p>
+<p><strong>Applicable to</strong>: <a href="../MappingSet/">MappingSet</a>, <a href="../Mapping/">Mapping</a></p>
 <div class="admonition info">
 <p class="admonition-title">Description</p>
 <p><em>Version IRI or version string of the source of the object term.</em></p>

object_type/index.html

@@ -917,7 +917,7 @@
 
 <h1 id="object_type">object_type</h1>
 <p><strong>URI</strong>: <a href="https://w3id.org/sssom/object_type">sssom:object_type</a></p>
-<p><strong>Applicable to</strong>: <a href="../Mapping/">Mapping</a>, <a href="../MappingSet/">MappingSet</a></p>
+<p><strong>Applicable to</strong>: <a href="../MappingSet/">MappingSet</a>, <a href="../Mapping/">Mapping</a></p>
 <div class="admonition info">
 <p class="admonition-title">Description</p>
 <p><em>The type of entity that is being mapped.</em></p>

other/index.html

@@ -910,7 +910,7 @@
 
 <h1 id="other">other</h1>
 <p><strong>URI</strong>: <a href="https://w3id.org/sssom/other">sssom:other</a></p>
-<p><strong>Applicable to</strong>: <a href="../Mapping/">Mapping</a>, <a href="../MappingSet/">MappingSet</a></p>
+<p><strong>Applicable to</strong>: <a href="../MappingSet/">MappingSet</a>, <a href="../Mapping/">Mapping</a></p>
 <div class="admonition info">
 <p class="admonition-title">Description</p>
 <p><em>Pipe separated list of key value pairs for properties not part of the SSSOM spec. Can be used to encode additional provenance data. NOTE. This field is not recommended for general use, and should be used sparingly. See https://github.com/mapping-commons/sssom/blob/master/examples/schema/extension-slots.sssom.tsv for an alternative approach based on extension slots.</em></p>

publication_date/index.html

@@ -917,7 +917,7 @@
 
 <h1 id="publication_date">publication_date</h1>
 <p><strong>URI</strong>: <a href="http://purl.org/dc/terms/created">dcterms:created</a></p>
-<p><strong>Applicable to</strong>: <a href="../Mapping/">Mapping</a>, <a href="../MappingSet/">MappingSet</a></p>
+<p><strong>Applicable to</strong>: <a href="../MappingSet/">MappingSet</a>, <a href="../Mapping/">Mapping</a></p>
 <div class="admonition info">
 <p class="admonition-title">Description</p>
 <p><em>The date the mapping was published. This is different from the date the mapping was asserted.</em></p>

see_also/index.html

@@ -917,7 +917,7 @@
 
 <h1 id="see_also">see_also</h1>
 <p><strong>URI</strong>: <a href="http://www.w3.org/2000/01/rdf-schema#seeAlso">rdfs:seeAlso</a></p>
-<p><strong>Applicable to</strong>: <a href="../Mapping/">Mapping</a>, <a href="../MappingSet/">MappingSet</a></p>
+<p><strong>Applicable to</strong>: <a href="../MappingSet/">MappingSet</a>, <a href="../Mapping/">Mapping</a></p>
 <div class="admonition info">
 <p class="admonition-title">Description</p>
 <p><em>A URL specific for the mapping instance. E.g. for kboom we have a per-mapping image that shows surrounding axioms that drive probability. Could also be a github issue URL that discussed a complicated alignment</em></p>