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Change subject and object source references to be CURIEs in table format #177

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merged 2 commits into from
Jun 3, 2022
Merged

Change subject and object source references to be CURIEs in table format #177

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c8c8a62
Update sssom.yaml
matentzn May 20, 2022
de61776
Merge branch 'master' into issue126-sourcecurie
matentzn Jun 3, 2022
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16 changes: 10 additions & 6 deletions src/linkml/sssom.yaml
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Expand Up @@ -264,10 +264,12 @@ slots:
slot_uri: dcterms:license
subject_source:
description: URI of ontology source for the subject.
range: uri
range: EntityReference
examples:
- value: http://purl.obolibrary.org/obo/mondo.owl
description: (A persistent IRI pointing to the latest version of the Mondo ontology.)
- value: obo:mondo.owl
description: A persistent OBO CURIE pointing to the latest version of the Mondo ontology.
- value: wikidata:Q7876491
description: A Wikidata identifier for the Uberon ontology resource.
subject_source_version:
description: Version IRI or version string of the source of the subject term.
range: string
Expand All @@ -276,10 +278,12 @@ slots:
description: (A persistent Version IRI pointing to the Mondo version '2021-01-30')
object_source:
description: IRI of ontology source for the object. Version IRI preferred.
range: uri
range: EntityReference
examples:
- value: http://purl.obolibrary.org/obo/mondo.owl
description: (A persistent IRI pointing to the latest version of the Mondo ontology.)
- value: obo:mondo.owl
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@cmungall cmungall Jun 2, 2022 •
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it's slightly unsatisfying we don't have a way to specify the logical resource independent of serialization format. See OBOFoundry/purl.obolibrary.org#852

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I 100% agree. obo:mondo would be better here as the canonical way to refer to OBO ontologies.

description: A persistent OBO CURIE pointing to the latest version of the Mondo ontology.
- value: wikidata:Q7876491
description: A Wikidata identifier for the Uberon ontology resource.
object_source_version:
description: Version IRI or version string of the source of the object term.
range: string
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