update docs

neurogenomics · Sep 1, 2023 · 7a2e467 · 7a2e467
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diff --git a/R/use_workflow.R b/R/use_workflow.R
@@ -44,8 +44,8 @@
 #' @param has_latex Install a suite of LaTeX dependencies used for 
 #' rendering Sweave (.rnw) and other documentation files.
 #' @param github_token Token for the repo. 
-#' Can be passed in using {{ secrets.PAT_GITHUB }}.
-#' By default, it uses {{ secrets.GITHUB_TOKEN }}
+#' Can be passed in using \{\{ secrets.PAT_GITHUB \}\}.
+#' By default, it uses \{\{ secrets.GITHUB_TOKEN \}\}
 #' which is automatically set up. Read 
 #' \href{https://docs.github.com/en/actions/security-guides/automatic-token-authentication}{
 #' here for more details}.

diff --git a/README.md b/README.md
@@ -267,7 +267,7 @@ utils::sessionInfo()
     ##  [4] utf8_1.2.3          BiocFileCache_2.6.1 R6_2.5.1           
     ##  [7] stats4_4.2.1        RSQLite_2.3.1       evaluate_0.21      
     ## [10] httr_1.4.6          ggplot2_3.4.2       pillar_1.9.0       
-    ## [13] yulab.utils_0.0.6   rworkflows_0.99.12  biocViews_1.66.3   
+    ## [13] yulab.utils_0.0.6   rworkflows_0.99.13  biocViews_1.66.3   
     ## [16] rlang_1.1.1         curl_5.0.0          data.table_1.14.8  
     ## [19] rstudioapi_0.14     whisker_0.4.1       blob_1.2.4         
     ## [22] DT_0.28             RUnit_0.4.32        rmarkdown_2.22     

diff --git a/man/use_workflow.Rd b/man/use_workflow.Rd