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Update trimgalore module for save_unpaired fix #221

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Update trimgalore module for save_unpaired fix

Update trimgalore module for save_unpaired fix #221

Triggered via pull request January 8, 2025 09:51
@pinin4fjordspinin4fjords
synchronize #1482
Status Success
Total duration 35s
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on: pull_request_target
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13 errors and 1 warning
Test Subworkflow FASTQ_FASTQC_UMITOOLS_TRIMGALORE.test single end read with UMI: Test Subworkflow FASTQ_FASTQC_UMITOOLS_TRIMGALORE#L1
Assertion failed: 1 of 3 assertions failed
Test Subworkflow FASTQ_FASTQC_UMITOOLS_TRIMGALORE.test paired end read with UMI: Test Subworkflow FASTQ_FASTQC_UMITOOLS_TRIMGALORE#L1
Assertion failed: 1 of 2 assertions failed
Test Subworkflow FASTQ_FASTQC_UMITOOLS_TRIMGALORE.test paired end read without UMI: Test Subworkflow FASTQ_FASTQC_UMITOOLS_TRIMGALORE#L1
Assertion failed: 1 of 2 assertions failed
Test Subworkflow FASTQ_FASTQC_UMITOOLS_TRIMGALORE.test single end read with UMI - stub: Test Subworkflow FASTQ_FASTQC_UMITOOLS_TRIMGALORE#L1
Assertion failed: 1 of 2 assertions failed
Test Subworkflow FASTQ_FASTQC_UMITOOLS_TRIMGALORE.test paired end read with UMI - stub: Test Subworkflow FASTQ_FASTQC_UMITOOLS_TRIMGALORE#L1
Assertion failed: 1 of 2 assertions failed
Test Subworkflow FASTQ_FASTQC_UMITOOLS_TRIMGALORE.test paired end read without UMI - stub: Test Subworkflow FASTQ_FASTQC_UMITOOLS_TRIMGALORE#L1
Assertion failed: 1 of 2 assertions failed
Test Subworkflow FASTQ_FASTQC_UMITOOLS_TRIMGALORE.test single end read with UMI: Test Subworkflow FASTQ_FASTQC_UMITOOLS_TRIMGALORE#L1
Assertion failed: 1 of 3 assertions failed
Test Subworkflow FASTQ_FASTQC_UMITOOLS_TRIMGALORE.test paired end read with UMI: Test Subworkflow FASTQ_FASTQC_UMITOOLS_TRIMGALORE#L1
Assertion failed: 1 of 2 assertions failed
Test Subworkflow FASTQ_FASTQC_UMITOOLS_TRIMGALORE.test paired end read without UMI: Test Subworkflow FASTQ_FASTQC_UMITOOLS_TRIMGALORE#L1
Assertion failed: 1 of 2 assertions failed
Test Subworkflow FASTQ_FASTQC_UMITOOLS_TRIMGALORE.test single end read with UMI - stub: Test Subworkflow FASTQ_FASTQC_UMITOOLS_TRIMGALORE#L1
Assertion failed: 1 of 2 assertions failed
Test Subworkflow FASTQ_FASTQC_UMITOOLS_TRIMGALORE.test paired end read with UMI - stub: Test Subworkflow FASTQ_FASTQC_UMITOOLS_TRIMGALORE#L1
Assertion failed: 1 of 2 assertions failed
Test Subworkflow FASTQ_FASTQC_UMITOOLS_TRIMGALORE.test paired end read without UMI - stub: Test Subworkflow FASTQ_FASTQC_UMITOOLS_TRIMGALORE#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline with dummy UMI settings.--umi_dedup_tool 'umitools': Test pipeline with dummy UMI settings#L1
Assertion failed: 2 of 2 assertions failed
template_version
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636