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@obiba Open Source Software for Epidemiology

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    130 repositories

    • docker-mica

      Public
      Shell
      •
      GNU General Public License v3.0
      •3•0•0•1•Updated Feb 10, 2025Feb 10, 2025

    • mica-search-es8

      Public
      Java
      •
      GNU General Public License v3.0
      •0•0•1•0•Updated Feb 10, 2025Feb 10, 2025

    • plugins

      Public
      OBiBa plugins repository
      0•0•0•0•Updated Feb 10, 2025Feb 10, 2025

    • amber-doc

      Public
      Amber documentation
      Python
      •0•0•0•0•Updated Feb 9, 2025Feb 9, 2025

    • rock-doc

      Public
      Rock R server documentation
      Python
      •0•0•0•0•Updated Feb 9, 2025Feb 9, 2025

    • agate-doc

      Public
      Agate documentation
      Python
      •0•1•0•0•Updated Feb 9, 2025Feb 9, 2025

    • opal-doc

      Public
      Opal documentation
      Python
      •3•2•1•0•Updated Feb 9, 2025Feb 9, 2025

    • mica-doc

      Public
      Mica documentation
      Python
      •2•0•1•0•Updated Feb 9, 2025Feb 9, 2025

    • amber-template

      Public template
      Amber server with client apps, as Docker images to build.
      Dockerfile
      •
      MIT License
      •0•0•0•0•Updated Feb 9, 2025Feb 9, 2025

    • obiba.github.io

      Public
      Obiba Website
      HTML
      •2•0•0•0•Updated Feb 9, 2025Feb 9, 2025

    • docker-opal

      Public
      Shell
      •
      GNU General Public License v3.0
      •11•7•5•0•Updated Feb 8, 2025Feb 8, 2025

    • obiba-home

      Public
      Obiba development environment
      HTML
      •2•0•0•0•Updated Feb 8, 2025Feb 8, 2025

    • mica2

      Public
      Mica is a web portal for epidemiological study consortia.
      Java
      •
      GNU General Public License v3.0
      •15•11•77•16•Updated Feb 8, 2025Feb 8, 2025

    • docker-agate

      Public
      Shell
      •
      GNU General Public License v3.0
      •3•0•1•0•Updated Feb 8, 2025Feb 8, 2025

    • mica-tables-spss

      Public
      Mica study table source plugin based on a SPSS file
      Java
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Feb 8, 2025Feb 8, 2025

    • agate

      Public
      OBiBa's user ID provider.
      Java
      •
      GNU General Public License v3.0
      •7•4•3•0•Updated Feb 7, 2025Feb 7, 2025

    • opal

      Public
      OBiBa’s core database application for biobanks or epidemiological studies.
      Java
      •
      GNU General Public License v3.0
      •22•31•25•0•Updated Feb 5, 2025Feb 5, 2025

    • docker-rock

      Public
      Rock R server in a Docker container
      Shell
      •1•0•0•0•Updated Jan 28, 2025Jan 28, 2025

    • rock

      Public
      R server with a REST API
      Java
      •
      GNU General Public License v3.0
      •1•3•2•1•Updated Jan 28, 2025Jan 28, 2025

    • obiba-commons

      Public
      Reusable code for persistence (hibernate), security, spring and wicket.
      Java
      •9•5•0•0•Updated Jan 25, 2025Jan 25, 2025

    • magma

      Public
      Data and meta-data abstraction layer.
      Java
      •
      GNU General Public License v3.0
      •14•6•11•0•Updated Jan 25, 2025Jan 25, 2025

    • quasar-ui-amber

      Public
      Amber form components in a Quasar app extension
      Vue
      •
      MIT License
      •0•0•1•0•Updated Jan 20, 2025Jan 20, 2025

    • s3.resourcer

      Public
      R package to access S3 compatible object stores as resources
      JavaScript
      •
      GNU Lesser General Public License v2.1
      •2•0•0•0•Updated Jan 18, 2025Jan 18, 2025

    • opalr

      Public
      Opal R and Datashield utils
      R
      •3•3•3•0•Updated Jan 12, 2025Jan 12, 2025

    • magma-datasource-spss

      Public
      Magma datasource to read SPSS files
      Java
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 18, 2024Dec 18, 2024

    • datashield-deployment

      Public template
      Deployment of OBiBa for DataSHIELD
      Makefile
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 16, 2024Dec 16, 2024

    • opal-datasource-limesurvey

      Public
      Java
      •
      GNU General Public License v3.0
      •0•0•1•1•Updated Dec 3, 2024Dec 3, 2024

    • docker-r

      Public
      Docker image with R inside and a lot of system libs
      Dockerfile
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 8, 2024Nov 8, 2024

    • jennite-vcf-store

      Public
      VCF store
      Java
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 11, 2024Oct 11, 2024

    • opal-analysis-validate

      Public
      Opal analysis plugin for data quality assurance based on the validate R package
      R
      •
      GNU General Public License v3.0
      •0•0•2•1•Updated Oct 11, 2024Oct 11, 2024