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API: Datahandler now functions as a class #156

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merged 33 commits into from
Jun 9, 2021
Merged

API: Datahandler now functions as a class #156

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81bc748
API: datahandler is now a class
swkeemink Jun 3, 2021
715405d
JNB: updated the tutorial notebook for the new datahandler method
swkeemink Jun 3, 2021
0fa3466
TST: updated the relevant tests for the new datahandler method
swkeemink Jun 3, 2021
95eee04
JNB: cleaned up tutorial notebook a bit
swkeemink Jun 3, 2021
f384abf
RF: import pillow in basic datahandler file
swkeemink Jun 7, 2021
367afed
ENH: defined an abstract datahandler class
swkeemink Jun 7, 2021
5aaca93
STY: whitespace update
swkeemink Jun 7, 2021
7a48643
RF: added and renamed framebyframe datahandler to basic datahandler file
swkeemink Jun 7, 2021
7863c42
API: renamed datahandler to extraction
swkeemink Jun 7, 2021
7825ab0
RF: removed datahandler_framebyframe
swkeemink Jun 7, 2021
d58fccc
TST: API: updated tests for datahandler>extraction rename
swkeemink Jun 7, 2021
42c31b6
API: updated core for datahandler>extraction rename
swkeemink Jun 7, 2021
5ed5b5f
TST: RF: renamed datahandler test for extraction name change
swkeemink Jun 7, 2021
9781de9
BUG: added missing import
swkeemink Jun 7, 2021
53c95c0
RF: merged tests for standard and framebyframe loading
swkeemink Jun 7, 2021
c858f14
JNB: updated the basic usage notebook for datahandler changes
swkeemink Jun 7, 2021
7c67cef
API: renamed default datahandler class to DataHandlerTifffile
swkeemink Jun 7, 2021
4c8ccfa
TST:API: updated the tests for the default datahandler rename
swkeemink Jun 7, 2021
8a13326
DOC: updated the basic notebook for the default dataloader name change
swkeemink Jun 7, 2021
8e0dc77
DOC: change TBT to type
swkeemink Jun 7, 2021
ca32d5f
TST:RF: load datahandler inside test
swkeemink Jun 7, 2021
8f029cb
RF: import extraction module on top
swkeemink Jun 7, 2021
c36db10
API: changed datahandler_custom to just datahandler, and simplify dat…
swkeemink Jun 7, 2021
d33bf18
DOC: clarified class object used
swkeemink Jun 7, 2021
a6c695d
DOC: clarified and prettified low_memory mode explanation
swkeemink Jun 7, 2021
7edd9d8
TST:RF: split test_polys_not_2d() into two tests
swkeemink Jun 7, 2021
1d0b697
STY: whitespace update
swkeemink Jun 7, 2021
fbb04ef
DOC: extraction docstring update
swkeemink Jun 7, 2021
4e952e0
TST:RF: inherit Rois2MaskTifffile class for pillow testing
swkeemink Jun 7, 2021
351d72c
JNB: Improvements to extraction/datahandler description
scottclowe Jun 8, 2021
3059d9b
DOC: Improve docstrings
scottclowe Jun 8, 2021
e878d23
MNT: Change to staticmethod for datahandler methods
scottclowe Jun 8, 2021
53af2ab
CI:Travis: Allow suite2p to fail
scottclowe Jun 9, 2021
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5 changes: 5 additions & 0 deletions .travis.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -82,6 +82,11 @@ jobs:
- USE_OLDEST_DEPS="true"
- TEST_NOTEBOOKS="false"

allow_failures:
- env:
- USE_CONDA="binder"
- USE_SUITE2P="true"


###############################################################################
# Setup the environment before installing
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