Merge pull request #61 from ropensci/checklist

Checklist

.Rbuildignore

@@ -1,16 +1,15 @@
-^\.github$
+^.*\.Rproj$
 ^\.Rproj\.user$
-^\.travis\.yml$
-^_pkgdown.yml$
-^appveyor\.yml$
+^\.github$
 ^codemeta\.json$
 ^.zenodo\.json$
-^docs$
 ^man-roxygen$
 ^pkgdown$
-^sticker$
-^tic\.R$
-^.*\.Rproj$
+^_pkgdown.yml$
+^docs$
 ^cran-comments\.md$
-^CRAN-RELEASE$
+# checklist
+^checklist.yml$
+^codecov.yml$
+^LICENSE.md$
 ^\.httr-oauth$

.github/workflows/check_on_branch.yml

@@ -0,0 +1,17 @@
+on:
+  push:
+    branches-ignore:
+      - master
+      - ghpages
+
+name: "check package"
+
+jobs:
+  check-package:
+    runs-on: ubuntu-latest
+    name: "check package"
+    steps:
+      - uses: inbo/actions/check_pkg@master
+        with:
+          CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
+          ORCID_TOKEN: ${{ secrets.ORCID_TOKEN }}

.github/workflows/check_on_different_r_os.yml

@@ -0,0 +1,93 @@
+on:
+  push:
+    branches:
+      - master
+  pull_request:
+    branches:
+      - master
+
+name: R-CMD-check
+
+jobs:
+  R-CMD-check:
+    runs-on: ${{ matrix.config.os }}
+
+    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+
+    strategy:
+      fail-fast: false
+      matrix:
+        config:
+          - {os: macOS-latest,   r: 'devel'}
+          - {os: macOS-latest,   r: 'release'}
+          - {os: windows-latest, r: 'release'}
+          - {os: ubuntu-16.04,   r: 'oldrel',  rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"}
+
+    env:
+      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
+      RSPM: ${{ matrix.config.rspm }}
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      ORCID_TOKEN: ${{ secrets.ORCID_TOKEN }}
+
+    steps:
+      - uses: actions/checkout@v2
+
+      - uses: r-lib/actions/setup-r@master
+        with:
+          r-version: ${{ matrix.config.r }}
+
+      - uses: r-lib/actions/setup-pandoc@master
+
+      - name: Query dependencies
+        run: |
+          install.packages('remotes')
+          saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
+          writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
+        shell: Rscript {0}
+
+      - name: Cache R packages
+        if: runner.os != 'Windows'
+        uses: actions/cache@v1
+        with:
+          path: ${{ env.R_LIBS_USER }}
+          key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
+          restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
+
+      - name: Install system dependencies
+        if: runner.os == 'Linux'
+        env:
+          RHUB_PLATFORM: linux-x86_64-ubuntu-gcc
+        run: |
+          Rscript -e "remotes::install_github('r-hub/sysreqs')"
+          sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))")
+          sudo -s eval "$sysreqs"
+      - name: Install dependencies
+        run: |
+          remotes::install_deps(dependencies = TRUE)
+          remotes::install_cran("rcmdcheck")
+        shell: Rscript {0}
+
+      - name: Session info
+        run: |
+          options(width = 100)
+          pkgs <- installed.packages()[, "Package"]
+          sessioninfo::session_info(pkgs, include_base = TRUE)
+        shell: Rscript {0}
+
+      - name: Check
+        env:
+          _R_CHECK_CRAN_INCOMING_: false
+        run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check")
+        shell: Rscript {0}
+
+      - name: Show testthat output
+        if: always()
+        run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true
+        shell: bash
+
+      - name: Upload check results
+        if: failure()
+        uses: actions/upload-artifact@master
+        with:
+          name: ${{ runner.os }}-r${{ matrix.config.r }}-results
+          path: check

.github/workflows/check_on_master.yml

@@ -0,0 +1,19 @@
+on:
+  push:
+    branches:
+      - master
+  schedule:
+    - cron: '6 0 * * 1'
+
+name: "check package on master"
+
+jobs:
+  check-package:
+    runs-on: ubuntu-latest
+    name: "check package"
+    steps:
+      - uses: inbo/actions/check_pkg@master
+        with:
+          CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
+          ORCID_TOKEN: ${{ secrets.ORCID_TOKEN }}
+          token: ${{ secrets.pat }}

DESCRIPTION

@@ -1,51 +1,61 @@
 Package: git2rdata
 Title: Store and Retrieve Data.frames in a Git Repository
-Version: 0.2.1
-Authors@R: c(
-  person(
-    "Thierry", "Onkelinx", role = c("aut", "cre"), 
-    email = "[email protected]", 
-    comment = c(ORCID = "0000-0001-8804-4216")),
-  person(
-    "Floris", "Vanderhaeghe", role = "ctb", 
-    email = "[email protected]", 
-    comment = c(ORCID = "0000-0002-6378-6229")),
-  person(
-    "Peter", "Desmet", role = "ctb", 
-    email = "[email protected]", 
-    comment = c(ORCID = "0000-0002-8442-8025")),
-  person(
-    "Els", "Lommelen", role = "ctb", 
-    email = "[email protected]", 
-    comment = c(ORCID = "0000-0002-3481-5684")),
-  person(
-    "Research Institute for Nature and Forest",
-    role = c("cph", "fnd"), email = "[email protected]"))
-Description: Make versioning of data.frame easy and efficient using git repositories.
-Depends: R (>= 3.5.0)
+Version: 0.2.2
+Authors@R: 
+    c(person(given = "Thierry",
+             family = "Onkelinx",
+             role = c("aut", "cre"),
+             email = "[email protected]",
+             comment = c(ORCID = "0000-0001-8804-4216")),
+      person(given = "Floris",
+             family = "Vanderhaeghe",
+             role = "ctb",
+             email = "[email protected]",
+             comment = c(ORCID = "0000-0002-6378-6229")),
+      person(given = "Peter",
+             family = "Desmet",
+             role = "ctb",
+             email = "[email protected]",
+             comment = c(ORCID = "0000-0002-8442-8025")),
+      person(given = "Els",
+             family = "Lommelen",
+             role = "ctb",
+             email = "[email protected]",
+             comment = c(ORCID = "0000-0002-3481-5684")),
+      person(given = "Research Institute for Nature and Forest",
+             role = c("cph", "fnd"),
+             email = "[email protected]"))
+Description: Make versioning of data.frame easy and efficient using git
+    repositories.
+License: GPL-3
+URL: https://github.com/ropensci/git2rdata,
+    https://doi.org/10.5281/zenodo.1485309
+BugReports: https://github.com/ropensci/git2rdata/issues
+Depends: 
+    R (>= 3.5.0)
 Imports:
-  assertthat,
-  git2r (>= 0.23.0),
-  methods,
-  yaml
+    assertthat,
+    git2r (>= 0.23.0),
+    methods,
+    yaml
 Suggests:
-  spelling,
-  ggplot2,
-  knitr,
-  microbenchmark,
-  rmarkdown,
-  testthat
-License: GPL-3
+    ggplot2,
+    knitr,
+    microbenchmark,
+    rmarkdown,
+    spelling,
+    testthat
+VignetteBuilder: 
+    knitr
 Encoding: UTF-8
+Language: en-GB
 LazyData: true
 Roxygen: list(markdown = TRUE)
-RoxygenNote: 6.1.1
-URL: https://github.com/ropensci/git2rdata, https://doi.org/10.5281/zenodo.1485309
-BugReports: https://github.com/ropensci/git2rdata/issues
+RoxygenNote: 7.1.1
 Collate:
     'clean_data_path.R'
     'datahash.R'
-    'git2rdata-package.R'
+    'git2rdata_package.R'
     'write_vc.R'
     'is_git2rdata.R'
     'is_git2rmeta.R'
@@ -58,5 +68,3 @@ Collate:
     'relabel.R'
     'upgrade_data.R'
     'utils.R'
-VignetteBuilder: knitr
-Language: en-GB