-
Notifications
You must be signed in to change notification settings - Fork 0
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Showing
8 changed files
with
305 additions
and
12 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,246 @@ | ||
| <% @workflow_modal_id = modal('Workflow status', size: 'xl') do %> | ||
| <% | ||
| @downstream = false | ||
| def workflow_step(title, test_fun) | ||
| test = @name.send(test_fun) | ||
| content_tag(:div, class: 'card my-2') do | ||
| title_class = 'text-' + ( | ||
| @downstream ? 'muted' : test ? 'success' : 'info' | ||
| ) | ||
| icon = @downstream ? 'circle' : test ? 'check-circle' : 'hand-point-right' | ||
| content_tag(:div, class: "card-header #{title_class}") do | ||
| fa_icon(icon, class: 'mr-3') + content_tag(:span, title) | ||
| end + | ||
| unless @downstream | ||
| @downstream ||= !test.present? | ||
| content_tag(:div, class: 'card-body') do | ||
| yield(test) | ||
| end | ||
| end | ||
| end | ||
| end | ||
| %> | ||
|
|
||
| <!-- 01: Name exists --> | ||
| <%= workflow_step('Initial registration', :present?) do |pass| %> | ||
| <% if pass %> | ||
| This name was first registered in the system on | ||
| <%= time_tag(@name.created_at, format: '%F') %>. | ||
| <% else %> | ||
| This should never happen! | ||
| <% end %> | ||
| <% end %> | ||
|
|
||
| <!-- 02: Name claimed --> | ||
| <%= workflow_step('User claim', :after_claim?) do |pass| %> | ||
| <% if pass %> | ||
| <% if @name.created_by %> | ||
| This name was successfully claimed by | ||
| <%= link_to(@name.created_by.username, @name.created_by) %>. | ||
| <% else %> | ||
| This name was automatically processed by the SeqCode Registry. | ||
| <% end %> | ||
| <% else %> | ||
| <h5 class="mt-2 text-info">Next step:</h5> | ||
| <ul> | ||
| <li> | ||
| This name has not been claimed yet. You can | ||
| <%= link_to( | ||
| 'claim it now', claim_name_url(@name), | ||
| method: :post, | ||
| data: { confirm: 'Are you sure? This action cannot be undone' } | ||
| ) %>. | ||
| </li> | ||
| </ul> | ||
| <% end %> | ||
| <% end %> | ||
|
|
||
| <!-- 03: Name in registry list --> | ||
| <%= workflow_step('Name in registry list', :after_register?) do |pass| %> | ||
| <% if pass %> | ||
| <% if @name.register %> | ||
| This name was added to the registry list | ||
| <%= link_to(@name.register.acc_url, @name.register) %>. | ||
| <% else %> | ||
| This name was registered by a mechanism parallel to registry lists. | ||
| <% end %> | ||
| <% else %> | ||
| This name has not been added to a registry list yet. | ||
| <h5 class="mt-2 text-info">Next step:</h5> | ||
| <ul> | ||
| <li> | ||
| <% if @name.can_edit?(current_user) %> | ||
| You can | ||
| <%= link_to( | ||
| 'propose name by adding it to a registry list', | ||
| new_register_url(name: @name), | ||
| ) %>. | ||
| <% else %> | ||
| You cannot currently propose name, since you don't have editing | ||
| privileges. If you want to gain editing privileges for this name, | ||
| please <%= link_to('contact us', page_connect_url) %>. | ||
| <% end %> | ||
| </li> | ||
| </ul> | ||
| <% end %> | ||
| <% end %> | ||
|
|
||
| <!-- 04: Name submitted --> | ||
| <%= workflow_step('Name submission', :after_submission?) do |pass| %> | ||
| <% if pass %> | ||
| This name was submitted for evaluation | ||
| <% if @name.submitted_by %> | ||
| by <%= link_to(@name.submitted_by.username, @name.submitted_by) %> | ||
| <% end %> | ||
| <% if @name.submitted_at %> | ||
| on <%= time_tag(@name.submitted_at, format: '%F') %> | ||
| <% end %> | ||
| <% if @name.register %> | ||
| as part of the registry list | ||
| <%= link_to(@name.register.acc_url, @name.register) %>. | ||
| <% else %> | ||
| by a mechanism parallel to registry lists. | ||
| <% end %> | ||
| <% else %> | ||
| This name has not been submitted yet. | ||
| <h5 class="mt-2 text-info">Next step:</h5> | ||
| <% if @name.register %> | ||
| <ol> | ||
| <li> | ||
| If the publication reporting this name is still in preparation | ||
| or undergoing peer-review, go to | ||
| <%= link_to(@name.register.acc_url, @name.register) %> and | ||
| click <b>Submit register list for evaluation</b> at the bottom of | ||
| the page. This is known in SeqCode as "Path 1". | ||
| </li> | ||
| <li> | ||
| If this name has already been published in a peer-reviewed outlet, | ||
| go to <%= link_to(@name.register.acc_url, @name.register) %> and | ||
| click <b>Notify about effective publication</b> at the bottom of | ||
| the page. This is known in SeqCode as "Path 2". | ||
| </li> | ||
| </ol> | ||
| <% else %> | ||
| <ul> | ||
| <li> | ||
| <!-- This is definitively a mistake! --> | ||
| <span class="text-danger">No actions are currently available.</span> | ||
| If you think this is a mistake, please | ||
| <%= link_to('contact us', page_connect_url) %>. | ||
| </li> | ||
| </ul> | ||
| <% end %> | ||
| <% end %> | ||
| <% end %> | ||
|
|
||
| <!-- 05: Name approved --> | ||
| <%= workflow_step('Name approval', :after_approval?) do |pass| %> | ||
| <% if pass %> | ||
| <% if @name.approved_by %> | ||
| This name was approved | ||
| <% if @name.approved_by %> | ||
| by <%= link_to(@name.approved_by.username, @name.approved_by) %> | ||
| <% end %> | ||
| <% if @name.approved_at %> | ||
| on <%= time_tag(@name.approved_at, format: '%F') %> | ||
| <% end %> | ||
| after manual review. | ||
| <% else %> | ||
| This name was marked as approved. | ||
| <% end %> | ||
| <% else %> | ||
| This name is yet to be approved. | ||
| <h5 class="mt-2 text-info">Next step:</h5> | ||
| <ul> | ||
| <li> | ||
| This name is currently undergoing manual curation by the SeqCode team, | ||
| and the submitter will be notified soon about the next steps. If you | ||
| want to inquire about the status of this submission, please | ||
| <%= link_to('contact us', page_connect_url) %>. | ||
| </li> | ||
| </ul> | ||
| <% end %> | ||
| <% end %> | ||
|
|
||
| <!-- 06: SeqCode notified --> | ||
| <%= workflow_step('SeqCode notification', :after_notification?) do |pass| %> | ||
| <% if pass %> | ||
| The SeqCode was notified | ||
| <% if @name.register&.notified_at %> | ||
| on <%= time_tag(@name.register.notified_at, format: '%F') %> | ||
| <% end %> | ||
| of effective publication of this name, | ||
| <% if @name.register %> | ||
| as part of the register list | ||
| <%= link_to(@name.register.acc_url, @name.register) %>. | ||
| <% else %> | ||
| through validation under another code of nomenclature. | ||
| <% end %> | ||
| <% else %> | ||
| The SeqCode has not been notified of effective publication yet. | ||
| <h5 class="mt-2 text-info">Next step:</h5> | ||
| <ul> | ||
| <li> | ||
| <% if @name.register %> | ||
| If this name has already been published in a peer-reviewed outlet, | ||
| go to <%= link_to(@name.register.acc_url, @name.register) %> and | ||
| click <b>Notify about effective publication</b> at the bottom of | ||
| the page. Otherwise, this name is reserved for up to a year or until | ||
| an effective publication becomes available and the SeqCode is | ||
| notified. | ||
| <% else %> | ||
| <!-- This is definitively a mistake! --> | ||
| <span class="text-danger">No actions are currently available.</span> | ||
| If you think this is a mistake, please | ||
| <%= link_to('contact us', page_connect_url) %>. | ||
| <% end %> | ||
| </li> | ||
| </ul> | ||
| <% end %> | ||
| <% end %> | ||
|
|
||
| <!-- 07: Name validated --> | ||
| <%= workflow_step('Name validation', :validated?) do |pass| %> | ||
| <% if pass %> | ||
| This name is validly published | ||
| <% if @name.priority_date %> | ||
| with priority date: <%= time_tag(@name.priority_date, format: '%F') %>. | ||
| <% else %> | ||
| but the SeqCode Registry does not have a priority date on file. | ||
| <% end %> | ||
| <% else %> | ||
| This name is not validly published yet. | ||
| <h5 class="mt-2 text-info">Next step:</h5> | ||
| <ul> | ||
| <li> | ||
| This name is currently undergoing manual curation by the SeqCode team, | ||
| and the submitter will be notified soon about the next steps. If you | ||
| want to inquire about the status of this submission, please | ||
| <%= link_to('contact us', page_connect_url) %>. | ||
| </li> | ||
| </ul> | ||
| <% end %> | ||
| <% end %> | ||
|
|
||
| <% unless @name.icnp? %> | ||
| <!-- 08: Registry list published --> | ||
| <%= workflow_step( | ||
| 'Register list publication', | ||
| :after_register_publication?) do |pass| %> | ||
| <% if pass %> | ||
| The register list including this name was successfully published with | ||
| DOI: <%= link_to(@name.register.doi_url, @name.register.doi_url) %>. | ||
| <% else %> | ||
| <% end %> | ||
| <% end %> | ||
| <% end %> | ||
| <% end %> | ||
|
|
||
| <% if @name.can_see_status?(current_user) %> | ||
| <div class="text-center border-bottom mb-3 py-3"> | ||
| <%= modal_button(@workflow_modal_id) do %> | ||
| <%= fa_icon('paper-plane') %> | ||
| See the current workflow status of this name | ||
| <% end %> | ||
| </div> | ||
| <% end %> |
Oops, something went wrong.