Try tests without tox

.github/workflows/codestyle.yml

@@ -10,17 +10,11 @@ jobs:
     steps:
       - name: Checkout repository
         uses: actions/checkout@v2
-      - name: Install Conda w/ Python 3.11
+      - name: Install Conda w/ Python 3.12
         uses: conda-incubator/setup-miniconda@v2
         with:
-          auto-activate-base: false
-          python-version: '3.11'
-          channels: conda-forge
+          python-version: '3.12'
       - name: Install Dependencies
-        shell: bash -el {0}
-        run: |
-          pip install tox-conda flake8
+        run: pip install Flake8-pyproject
       - name: Check Code Style
-        shell: bash -el {0}
-        run: |
-          tox -e codestyle
+        run: flake8  .

.github/workflows/testing.yml

@@ -6,6 +6,10 @@ on:
   pull_request:
     branches: [ master ]
 
+env:
+  COBAYA_PACKAGES_PATH: ./cobaya_packages
+  SKLEARN_ALLOW_DEPRECATED_SKLEARN_PACKAGE_INSTALL: True
+
 jobs:
   test:
     name: ${{ matrix.name }}
@@ -18,43 +22,34 @@ jobs:
           - name: latest supported versions
             os: ubuntu-latest
             python-version: '3.11'
-            toxenv: py311-test-all-latest-cov
 
           - name: oldest supported versions
             os: ubuntu-latest
             python-version: '3.8'
-            toxenv: py38-test-oldest
 
           - name: macOS latest
             os: macos-latest
             python-version: '3.11'
-            toxenv: py311-test-latest
 
           - name: Windows latest
             os: windows-latest
-            python-version: '3.11'
-            toxenv: py311-test-latest
-            env:
-              PYTHONIOENCODING: utf-8
-              PYTHONUTF8: 1
+            python-version: '3.12'
 
     steps:
       - name: Checkout repository
         uses: actions/checkout@v3
       - name: Install Conda w/ Python ${{ matrix.python-version }}
         uses: conda-incubator/setup-miniconda@v3
         with:
-          auto-activate-base: false
+          activate-environment: soliket-tests
+          auto-activate-base: False
           python-version: ${{ matrix.python-version }}
           channels: conda-forge
-      - name: Install Dependencies
-        shell: bash -el {0}
-        run: |
-          pip install tox-conda
+          environment-file: soliket-tests.yml
+
       - name: Run Tests
         shell: bash -el {0}
-        run: |
-           tox -e ${{ matrix.toxenv }} ${{ matrix.toxargs }} -- ${{ matrix.toxposargs }}
-      - if: contains(matrix.toxenv, '-cov')
+        run: pip install -e . && pytest --cov=./ --cov-report=xml .
+      - if: matrix.os == 'ubuntu-latest'
         name: Report Coverage
         uses: codecov/codecov-action@v3

pyproject.toml

@@ -6,7 +6,7 @@ authors = [
 ]
 description = "Likelihood and Theory codes for the Simons Observatory."
 readme = "README.rst"
-requires-python = ">=3.8, <3.12"
+requires-python = ">=3.8"
 license = {text = "MIT"}
 dependencies = [
     "requests",
@@ -20,7 +20,7 @@ dependencies = [
     "pyccl >= 3.0; platform_system!='Windows'",
     "pyhalomodel",
     "scikit-learn",
-    "camb",
+    "camb >= 1.5.0",
     "getdist",
     "syslibrary>=0.2.0",
 ]

requirements.txt

@@ -1,12 +1,10 @@
 numpy
 scipy>=1.6
 pandas
-scikit-learn
 pyyaml
 py-bobyqa
 packaging
 tqdm
-tensorflow<2.14
 portalocker
 dill
 fuzzywuzzy

soliket-tests.yml

@@ -3,7 +3,7 @@ channels:
   - conda-forge
   - nodefaults
 dependencies:
-  - python>=3.8,<3.12
+  - python>=3.8
   - pip
   - pytest-cov
   - compilers

soliket/bias/bias.py

@@ -86,7 +86,7 @@ def get_Pk_gm_grid(self) -> dict:
 
 
 class Linear_bias(Bias):
-    """
+    r"""
     :Synopsis: Linear bias model.
 
     Has one free parameter, :math:`b_\mathrm{lin}` (``b_lin``).

soliket/cosmopower/cosmopower.py

@@ -220,7 +220,7 @@ def get_Cl(self, ell_factor: bool = False, units: str = "FIRASmuK2") -> dict:
         return cls
 
     def ell_factor(self, ls: np.ndarray, spectra: str) -> np.ndarray:
-        """
+        r"""
         Calculate the ell factor for a specific spectrum.
         These prefactors are used to convert from Cell to Dell and vice-versa.
 

soliket/mflike/mflike.py

@@ -115,7 +115,7 @@ def logp(self, **params_values):
         return self.loglike(cmbfg_dict)
 
     def loglike(self, cmbfg_dict):
-        """
+        r"""
         Computes the gaussian log-likelihood
 
         :param cmbfg_dict: the dictionary of theory + foregrounds
@@ -215,7 +215,7 @@ def get_cl_meta(spec):
             return exp_1, exp_2, pols, scls, symm
 
         def get_sacc_names(pol, exp_1, exp_2):
-            """
+            r"""
             Lower-level function of `prepare_data`.
             Translates the polarization combination and channel
             name of a given entry in the `spectra`
@@ -388,7 +388,7 @@ def get_sacc_names(pol, exp_1, exp_2):
         self.data = GaussianData("mflike", self.ell_vec, self.data_vec, self.cov)
 
     def _get_power_spectra(self, cmbfg):
-        """
+        r"""
         Get :math:`D_{\ell}` from the theory component
         already modified by ``theoryforge_MFLike``
 

soliket/tests/test_cosmopower.py

@@ -75,7 +75,7 @@ def test_cosmopower_import(request):
 def test_cosmopower_theory(request):
     info_dict['theory']['soliket.CosmoPower']['network_path'] = \
         os.path.join(request.config.rootdir, 'soliket/cosmopower/data/CP_paper')
-    model_fiducial = get_model(info_dict)   # noqa F841
+    model_fiducial = get_model(info_dict)  # noqa F841
 
 
 @pytest.mark.skipif(not HAS_COSMOPOWER, reason='test requires cosmopower')
@@ -91,7 +91,6 @@ def test_cosmopower_loglike(request):
 
 @pytest.mark.skipif(not HAS_COSMOPOWER, reason='test requires cosmopower')
 def test_cosmopower_against_camb(request):
-
     info_dict['theory'] = {'camb': {'stop_at_error': True}}
     model_camb = get_model(info_dict)
     logL_camb = float(model_camb.loglikes({})[0])

soliket/tests/test_mflike.py

@@ -48,16 +48,10 @@
 }
 
 
-if Version(camb.__version__) >= Version('1.4'):
-    chi2s = {"tt": 544.9017,
-             "te": 136.6051,
-             "ee": 166.1897,
-             "tt-te-et-ee": 787.9529}
-else:
-    chi2s = {"tt": 544.8797,
-             "te-et": 151.8197,
-             "ee": 166.2835,
-             "tt-te-et-ee": 787.9843}
+chi2s = {"tt": 544.9017,
+         "te": 136.6051,
+         "ee": 166.1897,
+         "tt-te-et-ee": 787.9529}
 
 pre = "test_data_sacc_"