Workflow file for this run
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| # Remove commented lines to also upload to github container registry | |
| name: Publish Docker images to DockerHub and GitHub Container Registry | |
| on: | |
| release: | |
| types: [published] | |
| workflow_dispatch: | |
| jobs: | |
| build_and_push_sgnf_base: | |
| name: Build and push multistage | |
| runs-on: ubuntu-latest | |
| continue-on-error: true | |
| steps: | |
| - name: Check out the repo | |
| uses: actions/checkout@v4 | |
| - name: Log in to Docker Hub | |
| uses: docker/login-action@f4ef78c080cd8ba55a85445d5b36e214a81df20a | |
| with: | |
| username: ${{ secrets.DOCKER_USERNAME }} | |
| password: ${{ secrets.DOCKERHUBPAT }} | |
| - name: Get release number without preceding v | |
| id: get_release_number | |
| run: echo "RELEASE_NUMBER=${GITHUB_REF#refs/tags/v}" >> $GITHUB_ENV | |
| - name: Build Docker images | |
| run: | | |
| cd dockerfiles | |
| pushd multistage | |
| docker build --target sgnf-hmmer -t chasemc2/sgnf-hmmer:$RELEASE_NUMBER . | |
| docker build --target sgnf-hmmer-plus -t chasemc2/sgnf-hmmer-plus:$RELEASE_NUMBER . | |
| docker build --squash --target sgnf-sgpy -t chasemc2/sgnf-sgpy:$RELEASE_NUMBER . | |
| popd | |
| pushd minimal | |
| docker build -t chasemc2/sgnf-minimal:$RELEASE_NUMBER . | |
| popd | |
| - name: Push Docker images | |
| run: | | |
| docker push chasemc2/sgnf-hmmer:$RELEASE_NUMBER | |
| docker push chasemc2/sgnf-hmmer-plus:$RELEASE_NUMBER | |
| docker push chasemc2/sgnf-sgpy:$RELEASE_NUMBER | |
| docker push chasemc2/sgnf-minimal:$RELEASE_NUMBER | |
| build_and_push_antismash: | |
| name: Build and push antismash | |
| runs-on: ubuntu-latest | |
| continue-on-error: true | |
| steps: | |
| - name: Check out the repo | |
| uses: actions/checkout@v4 | |
| - name: Log in to Docker Hub | |
| uses: docker/login-action@f4ef78c080cd8ba55a85445d5b36e214a81df20a | |
| with: | |
| username: ${{ secrets.DOCKER_USERNAME }} | |
| password: ${{ secrets.DOCKERHUBPAT }} | |
| - name: Get release number without preceding v | |
| id: get_release_number | |
| run: echo "RELEASE_NUMBER=${GITHUB_REF#refs/tags/v}" >> $GITHUB_ENV | |
| - name: Build Docker images | |
| run: | | |
| cd dockerfiles/antismash | |
| docker build -t chasemc2/sgnf-antismash:$RELEASE_NUMBER . | |
| - name: Push Docker images | |
| run: | | |
| docker push chasemc2/sgnf-antismash:$RELEASE_NUMBER | |
| # build_and_push_prokka: | |
| # name: Build and push prokka | |
| # runs-on: ubuntu-latest | |
| # continue-on-error: true | |
| # steps: | |
| # - name: Check out the repo | |
| # uses: actions/checkout@v4 | |
| # - name: Log in to Docker Hub | |
| # uses: docker/login-action@f4ef78c080cd8ba55a85445d5b36e214a81df20a | |
| # with: | |
| # username: ${{ secrets.DOCKER_USERNAME }} | |
| # password: ${{ secrets.DOCKERHUBPAT }} | |
| # - name: Get release number without preceding v | |
| # id: get_release_number | |
| # run: echo "RELEASE_NUMBER=${GITHUB_REF#refs/tags/v}" >> $GITHUB_ENV | |
| # - name: Build Docker images | |
| # run: | | |
| # cd dockerfiles/prokka | |
| # docker build -t chasemc2/sgnf-prokka:$RELEASE_NUMBER . | |
| # - name: Push Docker images | |
| # run: | | |
| # docker push chasemc2/sgnf-prokka:$RELEASE_NUMBER |