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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,9 +1,11 @@ | ||
| # Remove commented lines to also upload to github container registry | ||
| name: Publish Docker images to DockerHub and GitHub Container Registry | ||
| on: | ||
| release: | ||
| types: [published] | ||
| workflow_dispatch: | ||
| push: | ||
| branches: | ||
| - dev | ||
| jobs: | ||
| build_and_push_sgnf_base: | ||
| name: Build and push multistage | ||
|
|
@@ -12,72 +14,54 @@ jobs: | |
| steps: | ||
| - name: Check out the repo | ||
| uses: actions/checkout@v4 | ||
| - name: Set up Docker Buildx | ||
| uses: docker/setup-buildx-action@v2 | ||
| - name: Log in to Docker Hub | ||
| uses: docker/login-action@f4ef78c080cd8ba55a85445d5b36e214a81df20a | ||
| uses: docker/login-action@v3.3.0 | ||
| with: | ||
| username: ${{ secrets.DOCKER_USERNAME }} | ||
| password: ${{ secrets.DOCKERHUBPAT }} | ||
| - name: Get release number without preceding v | ||
| id: get_release_number | ||
| if: github.ref != 'refs/heads/dev' | ||
| run: echo "RELEASE_NUMBER=${GITHUB_REF#refs/tags/v}" >> $GITHUB_ENV | ||
| - name: Set DEV_TAG if on dev branch | ||
| if: github.ref == 'refs/heads/dev' | ||
| run: echo "RELEASE_NUMBER=dev" >> $GITHUB_ENV | ||
| - name: Build Docker images | ||
| run: | | ||
| cd dockerfiles | ||
| pushd multistage | ||
| docker build --target sgnf-hmmer -t chasemc2/sgnf-hmmer:$RELEASE_NUMBER . | ||
| docker build --target sgnf-hmmer-plus -t chasemc2/sgnf-hmmer-plus:$RELEASE_NUMBER . | ||
| docker build --squash --target sgnf-sgpy -t chasemc2/sgnf-sgpy:$RELEASE_NUMBER . | ||
| popd | ||
| pushd minimal | ||
| docker build -t chasemc2/sgnf-minimal:$RELEASE_NUMBER . | ||
| popd | ||
| - name: Push Docker images | ||
| run: | | ||
| docker push chasemc2/sgnf-hmmer:$RELEASE_NUMBER | ||
| docker push chasemc2/sgnf-hmmer-plus:$RELEASE_NUMBER | ||
| docker push chasemc2/sgnf-sgpy:$RELEASE_NUMBER | ||
| docker push chasemc2/sgnf-minimal:$RELEASE_NUMBER | ||
| cd dockerfiles | ||
| pushd multistage | ||
| docker buildx build --platform linux/amd64,linux/arm64 --target sgnf-hmmer -t chasemc2/sgnf-hmmer:$RELEASE_NUMBER --push . | ||
| docker buildx build --platform linux/amd64,linux/arm64 --target sgnf-hmmer-plus -t chasemc2/sgnf-hmmer-plus:$RELEASE_NUMBER --push . | ||
| docker buildx build --platform linux/amd64,linux/arm64 --squash --target sgnf-sgpy -t chasemc2/sgnf-sgpy:$RELEASE_NUMBER --push . | ||
| popd | ||
| pushd minimal | ||
| docker buildx build --platform linux/amd64,linux/arm64 -t chasemc2/sgnf-minimal:$RELEASE_NUMBER --push . | ||
| popd | ||
| build_and_push_antismash: | ||
| name: Build and push antismash | ||
| runs-on: ubuntu-latest | ||
| continue-on-error: true | ||
| steps: | ||
| - name: Check out the repo | ||
| uses: actions/checkout@v4 | ||
| - name: Log in to Docker Hub | ||
| uses: docker/login-action@f4ef78c080cd8ba55a85445d5b36e214a81df20a | ||
| with: | ||
| username: ${{ secrets.DOCKER_USERNAME }} | ||
| password: ${{ secrets.DOCKERHUBPAT }} | ||
| - name: Get release number without preceding v | ||
| id: get_release_number | ||
| run: echo "RELEASE_NUMBER=${GITHUB_REF#refs/tags/v}" >> $GITHUB_ENV | ||
| - name: Build Docker images | ||
| run: | | ||
| cd dockerfiles/antismash | ||
| docker build -t chasemc2/sgnf-antismash:$RELEASE_NUMBER . | ||
| - name: Push Docker images | ||
| run: | | ||
| docker push chasemc2/sgnf-antismash:$RELEASE_NUMBER | ||
| # build_and_push_prokka: | ||
| # name: Build and push prokka | ||
| # runs-on: ubuntu-latest | ||
| # continue-on-error: true | ||
| # steps: | ||
| # - name: Check out the repo | ||
| # uses: actions/checkout@v4 | ||
| # - name: Log in to Docker Hub | ||
| # uses: docker/login-action@f4ef78c080cd8ba55a85445d5b36e214a81df20a | ||
| # with: | ||
| # username: ${{ secrets.DOCKER_USERNAME }} | ||
| # password: ${{ secrets.DOCKERHUBPAT }} | ||
| # - name: Get release number without preceding v | ||
| # id: get_release_number | ||
| # run: echo "RELEASE_NUMBER=${GITHUB_REF#refs/tags/v}" >> $GITHUB_ENV | ||
| # - name: Build Docker images | ||
| # run: | | ||
| # cd dockerfiles/prokka | ||
| # docker build -t chasemc2/sgnf-prokka:$RELEASE_NUMBER . | ||
| # - name: Push Docker images | ||
| # run: | | ||
| # docker push chasemc2/sgnf-prokka:$RELEASE_NUMBER | ||
| name: Build and push antismash | ||
| runs-on: ubuntu-latest | ||
| continue-on-error: true | ||
| steps: | ||
| - name: Check out the repo | ||
| uses: actions/checkout@v4 | ||
| - name: Set up Docker Buildx | ||
| uses: docker/setup-buildx-action@v2 | ||
| - name: Log in to Docker Hub | ||
| uses: docker/[email protected] | ||
| with: | ||
| username: ${{ secrets.DOCKER_USERNAME }} | ||
| password: ${{ secrets.DOCKERHUBPAT }} | ||
| - name: Get release number without preceding v | ||
| id: get_release_number | ||
| if: github.ref != 'refs/heads/dev' | ||
| run: echo "RELEASE_NUMBER=${GITHUB_REF#refs/tags/v}" >> $GITHUB_ENV | ||
| - name: Set DEV_TAG if on dev branch | ||
| if: github.ref == 'refs/heads/dev' | ||
| run: echo "RELEASE_NUMBER=dev" >> $GITHUB_ENV | ||
| - name: Build Docker images | ||
| run: | | ||
| cd dockerfiles/antismash | ||
| docker buildx build --platform linux/amd64,linux/arm64 -t chasemc2/sgnf-antismash:$RELEASE_NUMBER --push . | ||