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update README
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suqingdong committed Aug 28, 2020
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Expand Up @@ -18,10 +18,12 @@ bam2html <input.bam> chrom:pos -c 300 # set the width of window
bam2html <input.bam> chrom:pos -color pink -bg green # set colors
```



### Example Results
- single position: [demo.1_985460.html](example/demo.1_985460.html)
- multiple positions: [demo.1_985460,985463,985469.html](example/demo.1_985460,985463,985469.html)
- region positions: [demo.1_985461-985465.html](example/demo.1_985461-985465.html)
- single position: [demo.1_985460.html](https://suqingdong.github.io/bam2html/example/demo.1_985460.html)
- multiple positions: [demo.1_985460,985463,985469.html](https://suqingdong.github.io/bam2html/example/demo.1_985460,985463,985469.html)
- region positions: [demo.1_985461-985465.html](https://suqingdong.github.io/bam2html/example/demo.1_985461-985465.html)

## Meaning of Base's Colors
| Color | Mapping Quality | Selector |
Expand All @@ -34,5 +36,4 @@ bam2html <input.bam> chrom:pos -color pink -bg green # set colors
> Underline: Secondary or orphan
## Documents
> https://bam2html.readthedocs.io
>
https://bam2html.readthedocs.io

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